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The map label for this gene is caaD [H]

Identifier: 49186851

GI number: 49186851

Start: 3803047

End: 3803379

Strand: Reverse

Name: caaD [H]

Synonym: BAS3853

Alternate gene names: 49186851

Gene position: 3803379-3803047 (Counterclockwise)

Preceding gene: 49186852

Following gene: 49186850

Centisome position: 72.74

GC content: 32.43

Gene sequence:

>333_bases
ATGGCGATAAAGCAAACGAATAATCCTAAAGTTGATCTTATTTACCGGAAGAGAAAAAGTGCGGAGGAAATGAAGCATCA
AGTTATTACATTTGCATTAATGATATTTTTAACATTAGTTGCATTTGTAGCAGTAGCATATCCGAAAACTTTCAGTCCGA
CTTTCTCAGTACCATTTATTTTACTATTAGCTGTGGTACAAGTAATTTTTCAATTGTACTATTTTATGCATATGAGTCAT
AAAGGACATGAAGCCGCAAGTTTCTTTCTTTATTCTGGTCTGTTAATCGGGTTGATTACAATTTTAGCTTTTATGACAAT
TGTGTGGATTTGA

Upstream 100 bases:

>100_bases
ACCGAAGTTTTATGTTGCGTCGATTTATTGGCACTTTATTGACGTAGTTTGGGTGTTTATTTTCACTGTAGTATATTTAA
TGGGAATGGTGGGATAAACA

Downstream 100 bases:

>100_bases
AAAGTGAAGAATAAGGGAGCTTGTGTTGTCACAGCTCCCTCTTCATATTATGTGAAAGGATAACCTTAAGAAGGTAGGTG
TGACAATGAGTAACTTGTGG

Product: cytochrome c oxidase subunit IVB

Products: NA

Alternate protein names: Cytochrome aa3 subunit 4B; Cytochrome c oxidase polypeptide IVB [H]

Number of amino acids: Translated: 110; Mature: 109

Protein sequence:

>110_residues
MAIKQTNNPKVDLIYRKRKSAEEMKHQVITFALMIFLTLVAFVAVAYPKTFSPTFSVPFILLLAVVQVIFQLYYFMHMSH
KGHEAASFFLYSGLLIGLITILAFMTIVWI

Sequences:

>Translated_110_residues
MAIKQTNNPKVDLIYRKRKSAEEMKHQVITFALMIFLTLVAFVAVAYPKTFSPTFSVPFILLLAVVQVIFQLYYFMHMSH
KGHEAASFFLYSGLLIGLITILAFMTIVWI
>Mature_109_residues
AIKQTNNPKVDLIYRKRKSAEEMKHQVITFALMIFLTLVAFVAVAYPKTFSPTFSVPFILLLAVVQVIFQLYYFMHMSHK
GHEAASFFLYSGLLIGLITILAFMTIVWI

Specific function: Unknown

COG id: COG3125

COG function: function code C; Heme/copper-type cytochrome/quinol oxidase, subunit 4

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c oxidase bacterial subunit 4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014257
- InterPro:   IPR005171 [H]

Pfam domain/function: PF03626 COX4_pro [H]

EC number: =1.9.3.1 [H]

Molecular weight: Translated: 12635; Mature: 12504

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIKQTNNPKVDLIYRKRKSAEEMKHQVITFALMIFLTLVAFVAVAYPKTFSPTFSVPFI
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
LLLAVVQVIFQLYYFMHMSHKGHEAASFFLYSGLLIGLITILAFMTIVWI
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AIKQTNNPKVDLIYRKRKSAEEMKHQVITFALMIFLTLVAFVAVAYPKTFSPTFSVPFI
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
LLLAVVQVIFQLYYFMHMSHKGHEAASFFLYSGLLIGLITILAFMTIVWI
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1964459 [H]