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The map label for this gene is ymfN [H]

Identifier: 49186804

GI number: 49186804

Start: 3769882

End: 3771654

Strand: Reverse

Name: ymfN [H]

Synonym: BAS3806

Alternate gene names: 49186804

Gene position: 3771654-3769882 (Counterclockwise)

Preceding gene: 49186805

Following gene: 49186803

Centisome position: 72.13

GC content: 34.18

Gene sequence:

>1773_bases
ATGATTACGACAACTTCTAAGCCATCTGAAATAGCTAAGTGGTATAAAAATTGGCGAAATGAACAGATACAGCATTTTAA
TATTTTGATCGATCCATCTCCTGAACTAAGAACAACATGGTATGCTGGACAAGTTGTGAAAGGAAACATAATAGCTAGTA
AGAAAAACATCTTGTCTTGTCAACGTCATCTAAATGATTTAAAGAGACAGGGGACTGAGGAGTTTCCTTGGATATTTGAT
GAAGAAAAGGCTCATAGACCAATACGATATATCGAAAAATTTTGTCGTCCATCAAAAGGTGACTATAAAAGGTTAGTTCT
TCAACCGTGGCAACACTTTGTTATAGGTTCTTTATATGGATGGATTCATAAGGATACTGGTTATAGGCGCTTTCGTGAGG
GCCTTATTTTTATTGGACGTAAAAATGGGAAAACGACAATGATTTCTGGTTTGTCTAATTATGCTGTTGCTAAAGATAAT
GAGCCAGGTGCTCGTGTTTATGTTTTGGCAAATACAAAACAACAAGCTGGAGAATTGTTTGATGAAAGTCGTGCAATGGT
TCAAAAATCCCCCCTTCTTCGGAAGCATTTACGTGAAAATCAGAAAGGCATTTTCCATGATAAAACGCATTCTAAAATTG
AACCTCGTGCATCTGACAGTAAGAAGCTAGACGGATTAAATACACATCTTGGTATTTTTGATGAAATACATGAATTTAAG
AATTTTAAGCTAATCAATGTTATTAAAAAATCACGTGGTGCACGTAAACAACCAATGATTGTTTATATCACTACAGCAGG
ATATCAGCTTGAAGGACCGCTTGTTCAATACTATGAAATTGCAACGGATGTTTTGGAAGGAGTTATCGACCAAGATAGAA
AGTTTTATTTCATGGCTGAAATGGATAGTGTAGATGAAATTGAGAATCCTGAACTATGGATTAAAGCAAACCCTAATATG
GGAGTTTCGCTAGACCTTCCATCGCTTATTGATGATTGGAATACAGACAAGCATACAGATGCTGAAAAAAATGACTGGAT
TACAAAGCAATTTAACATCTTTGTTGATAATGATGAAATGTCCTTTGTTGGTATTGAGATATTAAAAAGGAATGAAGAAG
TTATTGATATAAAGGGATTAGCTGGTAAAGAATGTGTTGCAGGTTATGATTTATCTGCAACAGAAGATTTTACAAGTGCT
TGTTTAGAGTTTCCTTTAGATGATGGAAATGTTTTTGTATTATCTCATAGTTGGGTTCCGCAGGCTAAAGTTGATCGTGA
TAACGAAAATATTAGCTTTAAAGAGTTTAAAGAAAAAGGTTGGCTCACCATTATCCCTGGTGAGTATGTGAAATATGAGT
ATGTGTATGATTGGTTTGTTGAGCAATCTGAACACTATTTCATAAAGAAAATTACTTATGATCCAGCAAATGCTTATCGT
TTAAATGAAGATTTGAAAGCGTATGGATTTAAAACTGAACCAGTTCGACAAGGTCATTTAACTTTAAGCCCAGCATTAAA
GGATGTAAAAGAATTGTTGTTGGATGGAAAAATAATTAGTAATAAAAACCGTCTTTTCCGTTGGTATATGAACAATGTAA
AGCTTGTGGAAGACAGGAACGGGAACTTTTTACCATCTAAACAGAGTAAATATCGAAAAATTGATGGCTTTGCAGCGTTT
TTAAATGCTCACACAGAAGTAATCCCTATGTTATCTCAATTACAAGGTGATGGAAATATTGAATTTATATCAGTTAACGA
TCTTTTTAAATAG

Upstream 100 bases:

>100_bases
CCTAAGTATTTACAGCAGATTCGTCAATATTTAGGGGAGCTAGGGTTGACTGGGGCAAGCCGGAAAAAGCTTCAGGAAGA
GTTAACTGGAGATTCTGATG

Downstream 100 bases:

>100_bases
AAAGGCGGTGAGAAATTGAAGCTGATTAATCGTTTTAAGGGAGCCATTAAAGGAGCTTCATTGGGATGGAAAGGTGCTGG
GTATAACTTCACTTCTTGGT

Product: prophage LambdaBa02, terminase, large subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 590; Mature: 590

Protein sequence:

>590_residues
MITTTSKPSEIAKWYKNWRNEQIQHFNILIDPSPELRTTWYAGQVVKGNIIASKKNILSCQRHLNDLKRQGTEEFPWIFD
EEKAHRPIRYIEKFCRPSKGDYKRLVLQPWQHFVIGSLYGWIHKDTGYRRFREGLIFIGRKNGKTTMISGLSNYAVAKDN
EPGARVYVLANTKQQAGELFDESRAMVQKSPLLRKHLRENQKGIFHDKTHSKIEPRASDSKKLDGLNTHLGIFDEIHEFK
NFKLINVIKKSRGARKQPMIVYITTAGYQLEGPLVQYYEIATDVLEGVIDQDRKFYFMAEMDSVDEIENPELWIKANPNM
GVSLDLPSLIDDWNTDKHTDAEKNDWITKQFNIFVDNDEMSFVGIEILKRNEEVIDIKGLAGKECVAGYDLSATEDFTSA
CLEFPLDDGNVFVLSHSWVPQAKVDRDNENISFKEFKEKGWLTIIPGEYVKYEYVYDWFVEQSEHYFIKKITYDPANAYR
LNEDLKAYGFKTEPVRQGHLTLSPALKDVKELLLDGKIISNKNRLFRWYMNNVKLVEDRNGNFLPSKQSKYRKIDGFAAF
LNAHTEVIPMLSQLQGDGNIEFISVNDLFK

Sequences:

>Translated_590_residues
MITTTSKPSEIAKWYKNWRNEQIQHFNILIDPSPELRTTWYAGQVVKGNIIASKKNILSCQRHLNDLKRQGTEEFPWIFD
EEKAHRPIRYIEKFCRPSKGDYKRLVLQPWQHFVIGSLYGWIHKDTGYRRFREGLIFIGRKNGKTTMISGLSNYAVAKDN
EPGARVYVLANTKQQAGELFDESRAMVQKSPLLRKHLRENQKGIFHDKTHSKIEPRASDSKKLDGLNTHLGIFDEIHEFK
NFKLINVIKKSRGARKQPMIVYITTAGYQLEGPLVQYYEIATDVLEGVIDQDRKFYFMAEMDSVDEIENPELWIKANPNM
GVSLDLPSLIDDWNTDKHTDAEKNDWITKQFNIFVDNDEMSFVGIEILKRNEEVIDIKGLAGKECVAGYDLSATEDFTSA
CLEFPLDDGNVFVLSHSWVPQAKVDRDNENISFKEFKEKGWLTIIPGEYVKYEYVYDWFVEQSEHYFIKKITYDPANAYR
LNEDLKAYGFKTEPVRQGHLTLSPALKDVKELLLDGKIISNKNRLFRWYMNNVKLVEDRNGNFLPSKQSKYRKIDGFAAF
LNAHTEVIPMLSQLQGDGNIEFISVNDLFK
>Mature_590_residues
MITTTSKPSEIAKWYKNWRNEQIQHFNILIDPSPELRTTWYAGQVVKGNIIASKKNILSCQRHLNDLKRQGTEEFPWIFD
EEKAHRPIRYIEKFCRPSKGDYKRLVLQPWQHFVIGSLYGWIHKDTGYRRFREGLIFIGRKNGKTTMISGLSNYAVAKDN
EPGARVYVLANTKQQAGELFDESRAMVQKSPLLRKHLRENQKGIFHDKTHSKIEPRASDSKKLDGLNTHLGIFDEIHEFK
NFKLINVIKKSRGARKQPMIVYITTAGYQLEGPLVQYYEIATDVLEGVIDQDRKFYFMAEMDSVDEIENPELWIKANPNM
GVSLDLPSLIDDWNTDKHTDAEKNDWITKQFNIFVDNDEMSFVGIEILKRNEEVIDIKGLAGKECVAGYDLSATEDFTSA
CLEFPLDDGNVFVLSHSWVPQAKVDRDNENISFKEFKEKGWLTIIPGEYVKYEYVYDWFVEQSEHYFIKKITYDPANAYR
LNEDLKAYGFKTEPVRQGHLTLSPALKDVKELLLDGKIISNKNRLFRWYMNNVKLVEDRNGNFLPSKQSKYRKIDGFAAF
LNAHTEVIPMLSQLQGDGNIEFISVNDLFK

Specific function: Unknown

COG id: COG4626

COG function: function code R; Phage terminase-like protein, large subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage terminase family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR005021
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF03354 Terminase_1 [H]

EC number: NA

Molecular weight: Translated: 68534; Mature: 68534

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITTTSKPSEIAKWYKNWRNEQIQHFNILIDPSPELRTTWYAGQVVKGNIIASKKNILSC
CCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEEECEEEECCEEECHHHHHHH
QRHLNDLKRQGTEEFPWIFDEEKAHRPIRYIEKFCRPSKGDYKRLVLQPWQHFVIGSLYG
HHHHHHHHHCCCCCCCEEECCHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
WIHKDTGYRRFREGLIFIGRKNGKTTMISGLSNYAVAKDNEPGARVYVLANTKQQAGELF
HHCCCCCHHHHHCCEEEEECCCCCEEEEECCCCCEEECCCCCCCEEEEEECCHHHHHHHH
DESRAMVQKSPLLRKHLRENQKGIFHDKTHSKIEPRASDSKKLDGLNTHLGIFDEIHEFK
HHHHHHHHHCHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
NFKLINVIKKSRGARKQPMIVYITTAGYQLEGPLVQYYEIATDVLEGVIDQDRKFYFMAE
CCCHHHHHHHCCCCCCCCEEEEEEECCEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEEE
MDSVDEIENPELWIKANPNMGVSLDLPSLIDDWNTDKHTDAEKNDWITKQFNIFVDNDEM
CCCCCCCCCCCEEEEECCCCCEEECCHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCC
SFVGIEILKRNEEVIDIKGLAGKECVAGYDLSATEDFTSACLEFPLDDGNVFVLSHSWVP
EEEEHEEECCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCC
QAKVDRDNENISFKEFKEKGWLTIIPGEYVKYEYVYDWFVEQSEHYFIKKITYDPANAYR
CCCCCCCCCCCCHHHHHHCCCEEEECCCCEEEEEEEEEECCCCCCEEEEEEEECCCCCEE
LNEDLKAYGFKTEPVRQGHLTLSPALKDVKELLLDGKIISNKNRLFRWYMNNVKLVEDRN
ECCCHHHCCCCCCCCCCCCEEECHHHHHHHHHHHCCEEECCCCCEEEEEECCEEEEECCC
GNFLPSKQSKYRKIDGFAAFLNAHTEVIPMLSQLQGDGNIEFISVNDLFK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
>Mature Secondary Structure
MITTTSKPSEIAKWYKNWRNEQIQHFNILIDPSPELRTTWYAGQVVKGNIIASKKNILSC
CCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEEECEEEECCEEECHHHHHHH
QRHLNDLKRQGTEEFPWIFDEEKAHRPIRYIEKFCRPSKGDYKRLVLQPWQHFVIGSLYG
HHHHHHHHHCCCCCCCEEECCHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
WIHKDTGYRRFREGLIFIGRKNGKTTMISGLSNYAVAKDNEPGARVYVLANTKQQAGELF
HHCCCCCHHHHHCCEEEEECCCCCEEEEECCCCCEEECCCCCCCEEEEEECCHHHHHHHH
DESRAMVQKSPLLRKHLRENQKGIFHDKTHSKIEPRASDSKKLDGLNTHLGIFDEIHEFK
HHHHHHHHHCHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
NFKLINVIKKSRGARKQPMIVYITTAGYQLEGPLVQYYEIATDVLEGVIDQDRKFYFMAE
CCCHHHHHHHCCCCCCCCEEEEEEECCEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEEE
MDSVDEIENPELWIKANPNMGVSLDLPSLIDDWNTDKHTDAEKNDWITKQFNIFVDNDEM
CCCCCCCCCCCEEEEECCCCCEEECCHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCC
SFVGIEILKRNEEVIDIKGLAGKECVAGYDLSATEDFTSACLEFPLDDGNVFVLSHSWVP
EEEEHEEECCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCC
QAKVDRDNENISFKEFKEKGWLTIIPGEYVKYEYVYDWFVEQSEHYFIKKITYDPANAYR
CCCCCCCCCCCCHHHHHHCCCEEEECCCCEEEEEEEEEECCCCCCEEEEEEEECCCCCEE
LNEDLKAYGFKTEPVRQGHLTLSPALKDVKELLLDGKIISNKNRLFRWYMNNVKLVEDRN
ECCCHHHCCCCCCCCCCCCEEECHHHHHHHHHHHCCEEECCCCCEEEEEECCEEEEECCC
GNFLPSKQSKYRKIDGFAAFLNAHTEVIPMLSQLQGDGNIEFISVNDLFK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]