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The map label for this gene is clpP [H]

Identifier: 49186802

GI number: 49186802

Start: 3767919

End: 3768674

Strand: Reverse

Name: clpP [H]

Synonym: BAS3804

Alternate gene names: 49186802

Gene position: 3768674-3767919 (Counterclockwise)

Preceding gene: 49186803

Following gene: 49186801

Centisome position: 72.08

GC content: 35.45

Gene sequence:

>756_bases
GTGGGAAAGAACAAACAGAATAAGTTTTTTCAAATGAAAGCATCCGCCAACGGTAAAACGGCTGATGTTTTTATTTATGG
AGAAATTACAAAGTATGCATGGGAAGAGTATGGAGAAGTATCTTCTATTACGTTCAAAAATGAACTTGATGAACTAGGTG
ACGATATTAAAACGATTAACCTTTACATCAATAGTCCAGGTGGATCTGTCTTTGAAACGATGGCTATTATTGCAATGTTA
CAAAGGCATCATGCGAAGATTATCTCTTATATTGATGGAATAGGCGCTTCATGTGCGTCAGTATTACCAATGATTTCAGA
CAAAATTATTATGTATGCTAATTCAATGATGATGATTCACAATGCATGGACATATGCATCAGGAAATGCCGATCAGCTAC
GTAAAGCAGCGGATGATATTGAACGTATTAACCAATCGATGGTACAACACTATCTAACCCGTGCTGGTGACAAGTTAGAT
GAAGATACATTAAAACAATTACTAGATGCAGAGACATGGTTATCAGCTGAAGAAGCAATGGGGTATGGACTTTGTGATGA
AATTATTCCAGCAAATAATGCAACAGCATGTCTAGATGAAAAGTGGATGAAGGAATATAAAAATATTCCACAACAATTAG
TTAATGCACAAGCTAACATATCATCAAACGAAATGTTAGAACGACAAAAAATTGCCGAAGAAGCGAAAGCTAACGCGGAC
TATATAAAAACAATTTTAGGACGAATTCATTCATGA

Upstream 100 bases:

>100_bases
GATAAACCACCAAAGGGAGGTTCAGCATCTCAATTGTGGATTTCTGGTGATTTATACCCAATTGATATGGACCCATCTCA
ACGAAAGGGGGTGAAAAGTA

Downstream 100 bases:

>100_bases
AAATGAAAAATAAATTTCGATTATCTCTTGGTAACTTTCAATACTTTTCAAAAAATACATTATTTGAATTAAAACAAAAT
TTATCTACTATTGGTCAACA

Product: prophage LambdaBa02, Clp protease family protein

Products: NA

Alternate protein names: Endopeptidase Clp [H]

Number of amino acids: Translated: 251; Mature: 250

Protein sequence:

>251_residues
MGKNKQNKFFQMKASANGKTADVFIYGEITKYAWEEYGEVSSITFKNELDELGDDIKTINLYINSPGGSVFETMAIIAML
QRHHAKIISYIDGIGASCASVLPMISDKIIMYANSMMMIHNAWTYASGNADQLRKAADDIERINQSMVQHYLTRAGDKLD
EDTLKQLLDAETWLSAEEAMGYGLCDEIIPANNATACLDEKWMKEYKNIPQQLVNAQANISSNEMLERQKIAEEAKANAD
YIKTILGRIHS

Sequences:

>Translated_251_residues
MGKNKQNKFFQMKASANGKTADVFIYGEITKYAWEEYGEVSSITFKNELDELGDDIKTINLYINSPGGSVFETMAIIAML
QRHHAKIISYIDGIGASCASVLPMISDKIIMYANSMMMIHNAWTYASGNADQLRKAADDIERINQSMVQHYLTRAGDKLD
EDTLKQLLDAETWLSAEEAMGYGLCDEIIPANNATACLDEKWMKEYKNIPQQLVNAQANISSNEMLERQKIAEEAKANAD
YIKTILGRIHS
>Mature_250_residues
GKNKQNKFFQMKASANGKTADVFIYGEITKYAWEEYGEVSSITFKNELDELGDDIKTINLYINSPGGSVFETMAIIAMLQ
RHHAKIISYIDGIGASCASVLPMISDKIIMYANSMMMIHNAWTYASGNADQLRKAADDIERINQSMVQHYLTRAGDKLDE
DTLKQLLDAETWLSAEEAMGYGLCDEIIPANNATACLDEKWMKEYKNIPQQLVNAQANISSNEMLERQKIAEEAKANADY
IKTILGRIHS

Specific function: Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins [H]

COG id: COG0740

COG function: function code OU; Protease subunit of ATP-dependent Clp proteases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S14 family [H]

Homologues:

Organism=Caenorhabditis elegans, GI17538017, Length=134, Percent_Identity=32.8358208955224, Blast_Score=70, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001907
- InterPro:   IPR018215 [H]

Pfam domain/function: PF00574 CLP_protease [H]

EC number: =3.4.21.92 [H]

Molecular weight: Translated: 28154; Mature: 28023

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKNKQNKFFQMKASANGKTADVFIYGEITKYAWEEYGEVSSITFKNELDELGDDIKTIN
CCCCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEE
LYINSPGGSVFETMAIIAMLQRHHAKIISYIDGIGASCASVLPMISDKIIMYANSMMMIH
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEEEEE
NAWTYASGNADQLRKAADDIERINQSMVQHYLTRAGDKLDEDTLKQLLDAETWLSAEEAM
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHHHC
GYGLCDEIIPANNATACLDEKWMKEYKNIPQQLVNAQANISSNEMLERQKIAEEAKANAD
CCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHH
YIKTILGRIHS
HHHHHHHHHCC
>Mature Secondary Structure 
GKNKQNKFFQMKASANGKTADVFIYGEITKYAWEEYGEVSSITFKNELDELGDDIKTIN
CCCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEE
LYINSPGGSVFETMAIIAMLQRHHAKIISYIDGIGASCASVLPMISDKIIMYANSMMMIH
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEEEEE
NAWTYASGNADQLRKAADDIERINQSMVQHYLTRAGDKLDEDTLKQLLDAETWLSAEEAM
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHHHC
GYGLCDEIIPANNATACLDEKWMKEYKNIPQQLVNAQANISSNEMLERQKIAEEAKANAD
CCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHH
YIKTILGRIHS
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA