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The map label for this gene is 49185553

Identifier: 49185553

GI number: 49185553

Start: 2547801

End: 2548331

Strand: Reverse

Name: 49185553

Synonym: BAS2545

Alternate gene names: NA

Gene position: 2548331-2547801 (Counterclockwise)

Preceding gene: 49185554

Following gene: 49185552

Centisome position: 48.74

GC content: 33.15

Gene sequence:

>531_bases
ATGCAAACAATAAAAAGTGAAGAGAGGAATGTTTCACATATAACATTTGAAGCGTTGTTTAAACAAAACTATGCGTATGT
TGTTAAACAAATAATATGGATCATTAAAGAACAGACGGTTGCTGAGGAATTAGCGCAAGAGGTGTTTTTGCAACTGTATC
ATTCAGATTGGAAAGCAATAGAAAATTTACGTGCTTGGCTTATAAAGTCTTCTACTTATGTCGCCTATAACTACATTCGT
TCTGAAAAGAGACATCAGGCAAGAATCGATAAAGAAACCCAGTATCAAGAAGTTCAAATTGATTCGTCGCTAGATGATGA
ATGGATTAGAAAAGAAGAAATTACAAAAGTACAAATGGTGTTGCGAAAAATGAAAGAACAAGATCGAACAATATTATTAA
TGAAATTTTCAGGGTTTCGATATAAAGAAATCGCGCAAGTACTTCAGATTGACGATTCGTCTATTGGAACAATGTTGGCA
AGAGCTAAACTAAAATTCCGGAAAATTTTTGAACAAATGGAGGGTAAATAA

Upstream 100 bases:

>100_bases
CGTAATAGTACATAATAAAAATATTATTTTTTTGTCACAAAAATGAGCATTCTGGTTTCTCTATAATGCAGGCATCAAAA
GAGAGAGAGGTTTTATTCAC

Downstream 100 bases:

>100_bases
ATGACTTGTTATGAAATGGGATCCATTCAATCATATATTGATGGTGAACTTTCCCGTGAGGAAAGAAAACAATTTATAAA
ACATTTAGACAAATGTAAGG

Product: RNA polymerase sigma factor SigX

Products: NA

Alternate protein names: RNA Polymerase Sigma Factor SigX; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma-E Factor; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma Factor Sigma-70 Family

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MQTIKSEERNVSHITFEALFKQNYAYVVKQIIWIIKEQTVAEELAQEVFLQLYHSDWKAIENLRAWLIKSSTYVAYNYIR
SEKRHQARIDKETQYQEVQIDSSLDDEWIRKEEITKVQMVLRKMKEQDRTILLMKFSGFRYKEIAQVLQIDDSSIGTMLA
RAKLKFRKIFEQMEGK

Sequences:

>Translated_176_residues
MQTIKSEERNVSHITFEALFKQNYAYVVKQIIWIIKEQTVAEELAQEVFLQLYHSDWKAIENLRAWLIKSSTYVAYNYIR
SEKRHQARIDKETQYQEVQIDSSLDDEWIRKEEITKVQMVLRKMKEQDRTILLMKFSGFRYKEIAQVLQIDDSSIGTMLA
RAKLKFRKIFEQMEGK
>Mature_176_residues
MQTIKSEERNVSHITFEALFKQNYAYVVKQIIWIIKEQTVAEELAQEVFLQLYHSDWKAIENLRAWLIKSSTYVAYNYIR
SEKRHQARIDKETQYQEVQIDSSLDDEWIRKEEITKVQMVLRKMKEQDRTILLMKFSGFRYKEIAQVLQIDDSSIGTMLA
RAKLKFRKIFEQMEGK

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21165; Mature: 21165

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: PS00622 HTH_LUXR_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTIKSEERNVSHITFEALFKQNYAYVVKQIIWIIKEQTVAEELAQEVFLQLYHSDWKAI
CCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ENLRAWLIKSSTYVAYNYIRSEKRHQARIDKETQYQEVQIDSSLDDEWIRKEEITKVQMV
HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHEECCCCCCHHHHHHHHHHHHHHH
LRKMKEQDRTILLMKFSGFRYKEIAQVLQIDDSSIGTMLARAKLKFRKIFEQMEGK
HHHHHHCCCEEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQTIKSEERNVSHITFEALFKQNYAYVVKQIIWIIKEQTVAEELAQEVFLQLYHSDWKAI
CCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ENLRAWLIKSSTYVAYNYIRSEKRHQARIDKETQYQEVQIDSSLDDEWIRKEEITKVQMV
HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHEECCCCCCHHHHHHHHHHHHHHH
LRKMKEQDRTILLMKFSGFRYKEIAQVLQIDDSSIGTMLARAKLKFRKIFEQMEGK
HHHHHHCCCEEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA