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The map label for this gene is ygeA [H]

Identifier: 49185467

GI number: 49185467

Start: 2458578

End: 2459258

Strand: Reverse

Name: ygeA [H]

Synonym: BAS2459

Alternate gene names: 49185467

Gene position: 2459258-2458578 (Counterclockwise)

Preceding gene: 49185471

Following gene: 49185459

Centisome position: 47.03

GC content: 32.31

Gene sequence:

>681_bases
ATGAAAGTAATTGGTTTAATTGGCGGACTAAGTTGGGAATCTACATCATTATATTATAAACATATTAATACACTTACACT
CTCTCAATATGATCAAAATGCAAAGCTTGTTTTATATAGCATGGACTTTGGTGAAGTAACTACTTTATTACAAAATCATC
AATATGAAGAAGTGAAAAATGCATTAGTCACAGTTGCAAAAAAAGTTGAAAAATCTGGAGCTGACTGTTTATTAATGTGT
TCTAATACTGTCCATTTATTTGCTGAAGAGGTAGAAAGTGCAATATCCATCCCGCTTCTTCATATTGGTGATGTAAGTGC
TAAAGAAATGGTAGAACAGAATATTAAGCGTATCGGACTATTGGGTACGAAACAAACGATGGAACAAGACTTCTATAAAT
CACGACTAGCAAACTATAACATTGAGACAATCATCCCAAATGAAGAGGACAGAAATTTTATTCATCATGTAATTTTAAAT
GAATTAAGTAAAGGGATTATTTCAGAAATATCAAAAGAAAAGCTATTACAAATTACAAAATCATTAATTCAAAATGGCGC
AGAAGGTATACTACTAGGCTGCACCGAAATTCCACTGCTTATTTCCCAAAACGATCTTACTGTTCCTGTGTTTGATACTG
CTTTTTTACATGCAAATACTGCTGTGCAGTTTGCAGGATAA

Upstream 100 bases:

>100_bases
TAATTATTTTTATTTTTTGTTCAACGGTACGTTTAAATCATTGTATTCTTATCGGAATTATGAAATAATAAATTTAAAAT
AGTTACGGGAGGAATGTACG

Downstream 100 bases:

>100_bases
TCATATAAAAGCATAAAGGTTGAGCCTCTATGCTTTTATATGATTTACACTATTTATTTAATAGAGATTTAATAACTGAG
ATTGCTTCTTTTGCACCACC

Product: aspartate racemase family protein

Products: D-aspartate

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MKVIGLIGGLSWESTSLYYKHINTLTLSQYDQNAKLVLYSMDFGEVTTLLQNHQYEEVKNALVTVAKKVEKSGADCLLMC
SNTVHLFAEEVESAISIPLLHIGDVSAKEMVEQNIKRIGLLGTKQTMEQDFYKSRLANYNIETIIPNEEDRNFIHHVILN
ELSKGIISEISKEKLLQITKSLIQNGAEGILLGCTEIPLLISQNDLTVPVFDTAFLHANTAVQFAG

Sequences:

>Translated_226_residues
MKVIGLIGGLSWESTSLYYKHINTLTLSQYDQNAKLVLYSMDFGEVTTLLQNHQYEEVKNALVTVAKKVEKSGADCLLMC
SNTVHLFAEEVESAISIPLLHIGDVSAKEMVEQNIKRIGLLGTKQTMEQDFYKSRLANYNIETIIPNEEDRNFIHHVILN
ELSKGIISEISKEKLLQITKSLIQNGAEGILLGCTEIPLLISQNDLTVPVFDTAFLHANTAVQFAG
>Mature_226_residues
MKVIGLIGGLSWESTSLYYKHINTLTLSQYDQNAKLVLYSMDFGEVTTLLQNHQYEEVKNALVTVAKKVEKSGADCLLMC
SNTVHLFAEEVESAISIPLLHIGDVSAKEMVEQNIKRIGLLGTKQTMEQDFYKSRLANYNIETIIPNEEDRNFIHHVILN
ELSKGIISEISKEKLLQITKSLIQNGAEGILLGCTEIPLLISQNDLTVPVFDTAFLHANTAVQFAG

Specific function: Unknown

COG id: COG1794

COG function: function code M; Aspartate racemase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aspartate/glutamate racemases family [H]

Homologues:

Organism=Escherichia coli, GI1789205, Length=227, Percent_Identity=37.8854625550661, Blast_Score=184, Evalue=4e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015942
- InterPro:   IPR001920
- InterPro:   IPR018187
- InterPro:   IPR004380 [H]

Pfam domain/function: PF01177 Asp_Glu_race [H]

EC number: 5.1.1.13

Molecular weight: Translated: 25183; Mature: 25183

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: PS00924 ASP_GLU_RACEMASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVIGLIGGLSWESTSLYYKHINTLTLSQYDQNAKLVLYSMDFGEVTTLLQNHQYEEVKN
CEEEEEECCCCCCCCCEEEEHHCEEEEECCCCCCEEEEEECCHHHHHHHHHCCCHHHHHH
ALVTVAKKVEKSGADCLLMCSNTVHLFAEEVESAISIPLLHIGDVSAKEMVEQNIKRIGL
HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCC
LGTKQTMEQDFYKSRLANYNIETIIPNEEDRNFIHHVILNELSKGIISEISKEKLLQITK
CCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLIQNGAEGILLGCTEIPLLISQNDLTVPVFDTAFLHANTAVQFAG
HHHHCCCCEEEEECCCCCEEEECCCCEEEEEHHHEEECCCEEEECC
>Mature Secondary Structure
MKVIGLIGGLSWESTSLYYKHINTLTLSQYDQNAKLVLYSMDFGEVTTLLQNHQYEEVKN
CEEEEEECCCCCCCCCEEEEHHCEEEEECCCCCCEEEEEECCHHHHHHHHHCCCHHHHHH
ALVTVAKKVEKSGADCLLMCSNTVHLFAEEVESAISIPLLHIGDVSAKEMVEQNIKRIGL
HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCC
LGTKQTMEQDFYKSRLANYNIETIIPNEEDRNFIHHVILNELSKGIISEISKEKLLQITK
CCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLIQNGAEGILLGCTEIPLLISQNDLTVPVFDTAFLHANTAVQFAG
HHHHCCCCEEEEECCCCCEEEECCCCEEEEEHHHEEECCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: L-aspartate

Specific reaction: L-aspartate = D-aspartate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6350602; 2836407; 9278503 [H]