Click here to switch to the map view.

The map label for this gene is rapF [H]

Identifier: 49185355

GI number: 49185355

Start: 2345671

End: 2346783

Strand: Reverse

Name: rapF [H]

Synonym: BAS2346

Alternate gene names: 49185355

Gene position: 2346783-2345671 (Counterclockwise)

Preceding gene: 49185357

Following gene: 49185354

Centisome position: 44.88

GC content: 28.75

Gene sequence:

>1113_bases
ATGGGGGATATTATGACTGTTCAAGAAAAAAGTAATAAACAATTGATGGAATTATTACATGAATGGTATGAAGAAATTCG
TTTATATCATGTAGTAGAAGCAAAACAAACATATCTAAAAGTAAAAGAAAGTTTAAAAGGAATAGAAACAGACCAATATG
TATCATTCTATTATTCCCTGCTGAATTTTAGATATAAAGTTTTGGTAGATGGAATGAGTATTACAAAAGATTCTTTTAAT
CAAATAGAAAAACTACCTCATATTAAAGATGAATTTTCATTTTTAGCTTACTATTATTATTTCTTTAAGGCAATCCACTC
TACAATTATAGCAAATTATACTGAGGCAAAAACATACTATGAAAAGGCGGAAGGACTTTTAAAAGGTATACCTGACGAAA
TAGAAAAAGCTGAGTTTGAGTATAGATTTTCAACATACTGTTATCAATCTTATCAACCATTTGAAGCGATTCAACATGCA
GTAAAAGCCAAAGAAATATATTTGAATCATGTAGGCTATAAAATTAATATTGCTTTATGCGACAATGTATATGGACTGGC
TTGTATAGATCTAAGAGAATTTGAAAGAGCGGAAGAATGTCTCAATATGGTTATTGATATTTTTAAGAAGTATGATGAAG
AACAATTATTATTACGAGTACGATCCAATTTAGGCTGGTTATATAATATTCAAGATTTATATCCATTGGCGATTAGACAG
AGTTCTGAAATTATAAATACCATACCGAACCATTTTAAAGCATTATTTGTCTTAGCAAGAGCATATTATAAGTTAGAAGG
CATTGAAACAGCAAGAGCATATATCGAGCAAGGAATGAAATATACAAATGAATCAGGAAATGAGGAATATAAACACCGTT
TCGCAGTTTTAAATGAACTAATTACAGAACTGCCTAGAATTAAACTAAAAAAAGTAGTTACTGATGCCATTTCTTATTTT
AAAAAAGAGGAAATGTGGGATTGTGTAAAAGAATATGCAGAGATTTTAGCACTGCAATTTTACGAAACAAATAATCATGT
TAAAGCGAGTAAGTATTTCTATATTAGTAATAATGCTGATAAGAAACATTTAAGAAAAGGAGCGTTAAAGTAA

Upstream 100 bases:

>100_bases
ACTATTTAATTCAGAATATTCTGTATTTTTATGAAAAAAATCATGATTAAATTTAATTTATCGAATTCCTGTTATTATCA
GAATAAGCCTTTACAGAGAA

Downstream 100 bases:

>100_bases
TGAAAAAAATAAAAAAATTGTTATTCAGTACGATAATAGTAAGTACATTAGCATGTAGCATGATTAGTTTAAATGTATCA
CAACACTCTTCATTTAATGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 370; Mature: 369

Protein sequence:

>370_residues
MGDIMTVQEKSNKQLMELLHEWYEEIRLYHVVEAKQTYLKVKESLKGIETDQYVSFYYSLLNFRYKVLVDGMSITKDSFN
QIEKLPHIKDEFSFLAYYYYFFKAIHSTIIANYTEAKTYYEKAEGLLKGIPDEIEKAEFEYRFSTYCYQSYQPFEAIQHA
VKAKEIYLNHVGYKINIALCDNVYGLACIDLREFERAEECLNMVIDIFKKYDEEQLLLRVRSNLGWLYNIQDLYPLAIRQ
SSEIINTIPNHFKALFVLARAYYKLEGIETARAYIEQGMKYTNESGNEEYKHRFAVLNELITELPRIKLKKVVTDAISYF
KKEEMWDCVKEYAEILALQFYETNNHVKASKYFYISNNADKKHLRKGALK

Sequences:

>Translated_370_residues
MGDIMTVQEKSNKQLMELLHEWYEEIRLYHVVEAKQTYLKVKESLKGIETDQYVSFYYSLLNFRYKVLVDGMSITKDSFN
QIEKLPHIKDEFSFLAYYYYFFKAIHSTIIANYTEAKTYYEKAEGLLKGIPDEIEKAEFEYRFSTYCYQSYQPFEAIQHA
VKAKEIYLNHVGYKINIALCDNVYGLACIDLREFERAEECLNMVIDIFKKYDEEQLLLRVRSNLGWLYNIQDLYPLAIRQ
SSEIINTIPNHFKALFVLARAYYKLEGIETARAYIEQGMKYTNESGNEEYKHRFAVLNELITELPRIKLKKVVTDAISYF
KKEEMWDCVKEYAEILALQFYETNNHVKASKYFYISNNADKKHLRKGALK
>Mature_369_residues
GDIMTVQEKSNKQLMELLHEWYEEIRLYHVVEAKQTYLKVKESLKGIETDQYVSFYYSLLNFRYKVLVDGMSITKDSFNQ
IEKLPHIKDEFSFLAYYYYFFKAIHSTIIANYTEAKTYYEKAEGLLKGIPDEIEKAEFEYRFSTYCYQSYQPFEAIQHAV
KAKEIYLNHVGYKINIALCDNVYGLACIDLREFERAEECLNMVIDIFKKYDEEQLLLRVRSNLGWLYNIQDLYPLAIRQS
SEIINTIPNHFKALFVLARAYYKLEGIETARAYIEQGMKYTNESGNEEYKHRFAVLNELITELPRIKLKKVVTDAISYFK
KEEMWDCVKEYAEILALQFYETNNHVKASKYFYISNNADKKHLRKGALK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 6 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF00515 TPR_1 [H]

EC number: NA

Molecular weight: Translated: 43969; Mature: 43838

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDIMTVQEKSNKQLMELLHEWYEEIRLYHVVEAKQTYLKVKESLKGIETDQYVSFYYSL
CCCCEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
LNFRYKVLVDGMSITKDSFNQIEKLPHIKDEFSFLAYYYYFFKAIHSTIIANYTEAKTYY
HHHHHHHEECCCHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKAEGLLKGIPDEIEKAEFEYRFSTYCYQSYQPFEAIQHAVKAKEIYLNHVGYKINIALC
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEE
DNVYGLACIDLREFERAEECLNMVIDIFKKYDEEQLLLRVRSNLGWLYNIQDLYPLAIRQ
CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEHHHHHHHHHHH
SSEIINTIPNHFKALFVLARAYYKLEGIETARAYIEQGMKYTNESGNEEYKHRFAVLNEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
ITELPRIKLKKVVTDAISYFKKEEMWDCVKEYAEILALQFYETNNHVKASKYFYISNNAD
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEEEEEECCCC
KKHLRKGALK
HHHHHHCCCC
>Mature Secondary Structure 
GDIMTVQEKSNKQLMELLHEWYEEIRLYHVVEAKQTYLKVKESLKGIETDQYVSFYYSL
CCCEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
LNFRYKVLVDGMSITKDSFNQIEKLPHIKDEFSFLAYYYYFFKAIHSTIIANYTEAKTYY
HHHHHHHEECCCHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKAEGLLKGIPDEIEKAEFEYRFSTYCYQSYQPFEAIQHAVKAKEIYLNHVGYKINIALC
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEE
DNVYGLACIDLREFERAEECLNMVIDIFKKYDEEQLLLRVRSNLGWLYNIQDLYPLAIRQ
CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEHHHHHHHHHHH
SSEIINTIPNHFKALFVLARAYYKLEGIETARAYIEQGMKYTNESGNEEYKHRFAVLNEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
ITELPRIKLKKVVTDAISYFKKEEMWDCVKEYAEILALQFYETNNHVKASKYFYISNNAD
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEEEEEECCCC
KKHLRKGALK
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]