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The map label for this gene is yddQ [C]

Identifier: 49185123

GI number: 49185123

Start: 2113379

End: 2114428

Strand: Reverse

Name: yddQ [C]

Synonym: BAS2112

Alternate gene names: 49185123

Gene position: 2114428-2113379 (Counterclockwise)

Preceding gene: 49185124

Following gene: 49185116

Centisome position: 40.44

GC content: 33.52

Gene sequence:

>1050_bases
GTGGCAAAAGCAATTGAAAGGAGCAGCTTTATGAAATCTATTTGGAAATCAAAACGCTTTTTAATCGGCTTTACTTATTT
ATTCATACTTGTTTCAGCTAGTTTTATTTATAGTTGGTTCTTTAAAGATACCATCCCAAAAGCTCCCCAGTTACTTTACA
ATGACAATAACGAATTACTTGGAAAGGCTCCCTTTCCACCATCATTAATACCGCCTTTTGGATCGGATCGTTTTGGAGAG
TCTGTTTTCTTACAAATTATAGAAGGAGCAAAGTTCACCATTTTATTAGCCGTGGTAATTAGCTTCTTTCGCATATTATT
CGGAACATGTATAGGAATACTCTTAAGTTTATACGCTTCAAAATTCAAGAGATTTTTCCAGGCATGCTCAGAAGTTTTTT
ACTATATTCCTACTTTATTTATCGCATTTATACTCATCACACCTGTTAATATTGTAATCGTATCAAATGCTGATAGATTA
GATCCAAATATTTCATTTGCGTTTTATCAAGTACTCGTACTTATATTCGTCGCACTGCCTACACTTTCTTTATATATATC
CTCAGAGGTTGATGAATTTATGAAACAAGATTACATTTTAAGTTCCCAATTGCTAGGAGCTAGCCGTTTTCATATTATCA
AAAAACACTTACGAGTCTTGTTACTTGATCGCTTATTTGTGTTATTTATGGAACATATTGTCCAAGCGCTCATACTCGTT
ATCCATTTAGCGTTGCTTGATATTATAATTGGCGGGATCCAAATGCGGGAACTCTATGATGGAGCGCTCAAACCTGTTTC
TCTATCTAATGATTGGGCTGGCCTTATTGGATTAAATCGTTATGAAATGAATCTTTCATGGTGGATTATTTTTTATTCTC
TCGCTTCATTCTTTATTACGATTCTATTTATTAAGCTTATGACAATCGGGATTCAAGATGCACTGAAAGCAAGAGATTCG
CAAACTGTAGCAATTCAATCTGTTCCAGATCAAAAGAAATTTGTTAAACATAAAGATTCTTTTTCTTTTGCAAATAAAGT
AAACCTTTAA

Upstream 100 bases:

>100_bases
AAAAGGCGTTTATTTCACCACCAGCTGCATTTATCATACTTGTGATGATTATTTTACCGTTTTACGCCATTTTTCAAATC
ATCTCTTTCATGATGAATAG

Downstream 100 bases:

>100_bases
TCATCTCTCATAAATCAAGTATGAATTGGCATTGATATTAGTAGAATATAAAAAGATGATCCCTATTGAATACAGAGATC
ATCTTTTTTATACCGTCTAA

Product: hypothetical protein

Products: NA

Alternate protein names: ABC Transporter Permease Protein; Oligopeptide Transport System Permease Protein AppC; Oligopeptide Transport System Permease; Peptide ABC Transporter Permease; Oligopeptide Permease OppC; ABC Transporter; Dipeptide Transport System Permease; Peptide/Opine/Nickel Uptake Family ABC Transporter; ABC-Type Transport System Permease Protein; Oligopeptide Transport System Permease Protein-Like Protein; Peptide ABC Transporter Permease Protein; ABC-Type Transport System Permease Component; ABC Transporter Membrane Spanning Protein

Number of amino acids: Translated: 349; Mature: 348

Protein sequence:

>349_residues
MAKAIERSSFMKSIWKSKRFLIGFTYLFILVSASFIYSWFFKDTIPKAPQLLYNDNNELLGKAPFPPSLIPPFGSDRFGE
SVFLQIIEGAKFTILLAVVISFFRILFGTCIGILLSLYASKFKRFFQACSEVFYYIPTLFIAFILITPVNIVIVSNADRL
DPNISFAFYQVLVLIFVALPTLSLYISSEVDEFMKQDYILSSQLLGASRFHIIKKHLRVLLLDRLFVLFMEHIVQALILV
IHLALLDIIIGGIQMRELYDGALKPVSLSNDWAGLIGLNRYEMNLSWWIIFYSLASFFITILFIKLMTIGIQDALKARDS
QTVAIQSVPDQKKFVKHKDSFSFANKVNL

Sequences:

>Translated_349_residues
MAKAIERSSFMKSIWKSKRFLIGFTYLFILVSASFIYSWFFKDTIPKAPQLLYNDNNELLGKAPFPPSLIPPFGSDRFGE
SVFLQIIEGAKFTILLAVVISFFRILFGTCIGILLSLYASKFKRFFQACSEVFYYIPTLFIAFILITPVNIVIVSNADRL
DPNISFAFYQVLVLIFVALPTLSLYISSEVDEFMKQDYILSSQLLGASRFHIIKKHLRVLLLDRLFVLFMEHIVQALILV
IHLALLDIIIGGIQMRELYDGALKPVSLSNDWAGLIGLNRYEMNLSWWIIFYSLASFFITILFIKLMTIGIQDALKARDS
QTVAIQSVPDQKKFVKHKDSFSFANKVNL
>Mature_348_residues
AKAIERSSFMKSIWKSKRFLIGFTYLFILVSASFIYSWFFKDTIPKAPQLLYNDNNELLGKAPFPPSLIPPFGSDRFGES
VFLQIIEGAKFTILLAVVISFFRILFGTCIGILLSLYASKFKRFFQACSEVFYYIPTLFIAFILITPVNIVIVSNADRLD
PNISFAFYQVLVLIFVALPTLSLYISSEVDEFMKQDYILSSQLLGASRFHIIKKHLRVLLLDRLFVLFMEHIVQALILVI
HLALLDIIIGGIQMRELYDGALKPVSLSNDWAGLIGLNRYEMNLSWWIIFYSLASFFITILFIKLMTIGIQDALKARDSQ
TVAIQSVPDQKKFVKHKDSFSFANKVNL

Specific function: Probably Part Of The Binding-Protein-Dependent Transport System Yddopqrs. Probably Responsible For The Translocation Of The Substrate Across The Membrane. [C]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787760, Length=278, Percent_Identity=22.6618705035971, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787054, Length=252, Percent_Identity=21.031746031746, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39918; Mature: 39787

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKAIERSSFMKSIWKSKRFLIGFTYLFILVSASFIYSWFFKDTIPKAPQLLYNDNNELL
CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCC
GKAPFPPSLIPPFGSDRFGESVFLQIIEGAKFTILLAVVISFFRILFGTCIGILLSLYAS
CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KFKRFFQACSEVFYYIPTLFIAFILITPVNIVIVSNADRLDPNISFAFYQVLVLIFVALP
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
TLSLYISSEVDEFMKQDYILSSQLLGASRFHIIKKHLRVLLLDRLFVLFMEHIVQALILV
HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IHLALLDIIIGGIQMRELYDGALKPVSLSNDWAGLIGLNRYEMNLSWWIIFYSLASFFIT
HHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCHHHHCCCEEEECHHHHHHHHHHHHHHHH
ILFIKLMTIGIQDALKARDSQTVAIQSVPDQKKFVKHKDSFSFANKVNL
HHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHCCCCCHHHCCCC
>Mature Secondary Structure 
AKAIERSSFMKSIWKSKRFLIGFTYLFILVSASFIYSWFFKDTIPKAPQLLYNDNNELL
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCC
GKAPFPPSLIPPFGSDRFGESVFLQIIEGAKFTILLAVVISFFRILFGTCIGILLSLYAS
CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KFKRFFQACSEVFYYIPTLFIAFILITPVNIVIVSNADRLDPNISFAFYQVLVLIFVALP
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
TLSLYISSEVDEFMKQDYILSSQLLGASRFHIIKKHLRVLLLDRLFVLFMEHIVQALILV
HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IHLALLDIIIGGIQMRELYDGALKPVSLSNDWAGLIGLNRYEMNLSWWIIFYSLASFFIT
HHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCHHHHCCCEEEECHHHHHHHHHHHHHHHH
ILFIKLMTIGIQDALKARDSQTVAIQSVPDQKKFVKHKDSFSFANKVNL
HHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHCCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA