Click here to switch to the map view.

The map label for this gene is yjiA [H]

Identifier: 49184891

GI number: 49184891

Start: 1900761

End: 1901720

Strand: Direct

Name: yjiA [H]

Synonym: BAS1879

Alternate gene names: 49184891

Gene position: 1900761-1901720 (Clockwise)

Preceding gene: 49184889

Following gene: 49184893

Centisome position: 36.35

GC content: 33.85

Gene sequence:

>960_bases
ATGTACGAAATGATTCCAGTAACAATATTAACTGGTTTTCTTGGATCTGGGAAAACAACATTATTAAATCGTATTTTAAC
AGAGAATCACGGTCAGAAATTAGCGGTGATCGTAAATGAAATAGGGAAAATTGGTATCGATAATCAGTTGATTATGAATG
TTGAAGAAGAAATTATGGAAATGACAAACGGTTGTTTATGCTGTACTGTGCGGGAAGATTTACTCGTTGCGTTAAAACAA
TTACTGGATGTAAAAGCAGAAGGTAAAATGGACTTTGATGGATTAGTAATTGAAACAACTGGTCTTGCAAATCCAGGTCC
TATTATTCAAACATTCTTTTTAGATCCTGTTATTCAATCTGCATACCAAATTAATGGTGTTGTAACAGTAGTAGATAGTT
ATCATATACATAAACATTTTGAAAAAGGACTAGAAGCAAAAGAACAAATTGCATTTGCCGATGTTATATTAGTGAATAAG
TTAGATTTAATTGAAGAGAGCGAAAAAGAAAACCTCTTACATGAACTGCAAGGAATAAACCCGACTGCAAAGTTAATTCA
GTCGACTAACTGTGATGTGGATATTCCATCGTTACTAAAAATTCAAACGTTTAAAACGAAAGATACGTTACAAATTTATC
CTCATAAAGAGCATAATCATCTAGAAGGTGTAAAATCGTTTGTACTACGCGAAGAGCGTCCGCTAGATTTACAAAAACTG
AATGAATGGATGTCAGCTGTCGTTCAAGAACTAGGTGAATATTTATATCGCTACAAAGGAATTTTATCAATTGATGGAGT
AGATAAACGCATCGTTTTCCAAGGTGTGCATACACTGTTTGCTGCATCATATGATAGAGAGTGGCAAGAGGGCGAAGAAC
GAGTAAGTGAAGTTGTTTTCATCGGAAAAGATATTAATAAAGAATGGTTCCAAGAACATTTTGAGGAGTGTGTGAAATAA

Upstream 100 bases:

>100_bases
TTATTATATAGTTAGAGGGGCGTACAAACAATAAATATGTTTTGCTACAAAAACGATTATTTCTGTATGTTATAATGTAA
AAACATATAGCTATAAGGAG

Downstream 100 bases:

>100_bases
GTCTGCGTTTACTGCAGGCTTATTTTTTGGACTTAACTAAGTGTTTTGTAGAAAAATGATAGATTGCAAAAAACGAAGGA
TAATAAAAAAGCCTGTTTTC

Product: cobalamin synthesis protein/P47K family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MYEMIPVTILTGFLGSGKTTLLNRILTENHGQKLAVIVNEIGKIGIDNQLIMNVEEEIMEMTNGCLCCTVREDLLVALKQ
LLDVKAEGKMDFDGLVIETTGLANPGPIIQTFFLDPVIQSAYQINGVVTVVDSYHIHKHFEKGLEAKEQIAFADVILVNK
LDLIEESEKENLLHELQGINPTAKLIQSTNCDVDIPSLLKIQTFKTKDTLQIYPHKEHNHLEGVKSFVLREERPLDLQKL
NEWMSAVVQELGEYLYRYKGILSIDGVDKRIVFQGVHTLFAASYDREWQEGEERVSEVVFIGKDINKEWFQEHFEECVK

Sequences:

>Translated_319_residues
MYEMIPVTILTGFLGSGKTTLLNRILTENHGQKLAVIVNEIGKIGIDNQLIMNVEEEIMEMTNGCLCCTVREDLLVALKQ
LLDVKAEGKMDFDGLVIETTGLANPGPIIQTFFLDPVIQSAYQINGVVTVVDSYHIHKHFEKGLEAKEQIAFADVILVNK
LDLIEESEKENLLHELQGINPTAKLIQSTNCDVDIPSLLKIQTFKTKDTLQIYPHKEHNHLEGVKSFVLREERPLDLQKL
NEWMSAVVQELGEYLYRYKGILSIDGVDKRIVFQGVHTLFAASYDREWQEGEERVSEVVFIGKDINKEWFQEHFEECVK
>Mature_319_residues
MYEMIPVTILTGFLGSGKTTLLNRILTENHGQKLAVIVNEIGKIGIDNQLIMNVEEEIMEMTNGCLCCTVREDLLVALKQ
LLDVKAEGKMDFDGLVIETTGLANPGPIIQTFFLDPVIQSAYQINGVVTVVDSYHIHKHFEKGLEAKEQIAFADVILVNK
LDLIEESEKENLLHELQGINPTAKLIQSTNCDVDIPSLLKIQTFKTKDTLQIYPHKEHNHLEGVKSFVLREERPLDLQKL
NEWMSAVVQELGEYLYRYKGILSIDGVDKRIVFQGVHTLFAASYDREWQEGEERVSEVVFIGKDINKEWFQEHFEECVK

Specific function: Binds GTP. May function as GTP-dependent regulator [H]

COG id: COG0523

COG function: function code R; Putative GTPases (G3E family)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cobW C-terminal domain [H]

Homologues:

Organism=Homo sapiens, GI148727351, Length=343, Percent_Identity=33.8192419825073, Blast_Score=177, Evalue=2e-44,
Organism=Homo sapiens, GI33469141, Length=342, Percent_Identity=32.7485380116959, Blast_Score=175, Evalue=4e-44,
Organism=Homo sapiens, GI126722884, Length=343, Percent_Identity=33.5276967930029, Blast_Score=174, Evalue=7e-44,
Organism=Homo sapiens, GI146231952, Length=336, Percent_Identity=32.4404761904762, Blast_Score=174, Evalue=9e-44,
Organism=Homo sapiens, GI223941779, Length=332, Percent_Identity=32.8313253012048, Blast_Score=164, Evalue=1e-40,
Organism=Homo sapiens, GI223941776, Length=333, Percent_Identity=32.1321321321321, Blast_Score=157, Evalue=1e-38,
Organism=Homo sapiens, GI119120938, Length=320, Percent_Identity=31.875, Blast_Score=144, Evalue=1e-34,
Organism=Homo sapiens, GI310124603, Length=227, Percent_Identity=26.431718061674, Blast_Score=69, Evalue=7e-12,
Organism=Homo sapiens, GI310124599, Length=192, Percent_Identity=27.0833333333333, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI87082430, Length=318, Percent_Identity=40.5660377358491, Blast_Score=214, Evalue=6e-57,
Organism=Escherichia coli, GI1788499, Length=193, Percent_Identity=32.1243523316062, Blast_Score=87, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6324356, Length=361, Percent_Identity=30.4709141274238, Blast_Score=126, Evalue=4e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003495
- InterPro:   IPR011629 [H]

Pfam domain/function: PF02492 cobW; PF07683 CobW_C [H]

EC number: NA

Molecular weight: Translated: 36330; Mature: 36330

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYEMIPVTILTGFLGSGKTTLLNRILTENHGQKLAVIVNEIGKIGIDNQLIMNVEEEIME
CCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEHHHHHHHHCCCCCCHHHHHHHHHHHH
MTNGCLCCTVREDLLVALKQLLDVKAEGKMDFDGLVIETTGLANPGPIIQTFFLDPVIQS
HHCCEEEEEEHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
AYQINGVVTVVDSYHIHKHFEKGLEAKEQIAFADVILVNKLDLIEESEKENLLHELQGIN
HHHHCCEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PTAKLIQSTNCDVDIPSLLKIQTFKTKDTLQIYPHKEHNHLEGVKSFVLREERPLDLQKL
HHHHHHHCCCCCCCCCCHHEEEEECCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCHHHH
NEWMSAVVQELGEYLYRYKGILSIDGVDKRIVFQGVHTLFAASYDREWQEGEERVSEVVF
HHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEE
IGKDINKEWFQEHFEECVK
ECCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MYEMIPVTILTGFLGSGKTTLLNRILTENHGQKLAVIVNEIGKIGIDNQLIMNVEEEIME
CCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEHHHHHHHHCCCCCCHHHHHHHHHHHH
MTNGCLCCTVREDLLVALKQLLDVKAEGKMDFDGLVIETTGLANPGPIIQTFFLDPVIQS
HHCCEEEEEEHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
AYQINGVVTVVDSYHIHKHFEKGLEAKEQIAFADVILVNKLDLIEESEKENLLHELQGIN
HHHHCCEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PTAKLIQSTNCDVDIPSLLKIQTFKTKDTLQIYPHKEHNHLEGVKSFVLREERPLDLQKL
HHHHHHHCCCCCCCCCCHHEEEEECCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCHHHH
NEWMSAVVQELGEYLYRYKGILSIDGVDKRIVFQGVHTLFAASYDREWQEGEERVSEVVF
HHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEE
IGKDINKEWFQEHFEECVK
ECCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 1650347 [H]