Click here to switch to the map view.

The map label for this gene is 49184842

Identifier: 49184842

GI number: 49184842

Start: 1856990

End: 1857991

Strand: Direct

Name: 49184842

Synonym: BAS1830

Alternate gene names: NA

Gene position: 1856990-1857991 (Clockwise)

Preceding gene: 49184841

Following gene: 49184843

Centisome position: 35.52

GC content: 32.73

Gene sequence:

>1002_bases
ATGAGCTCTGAATTAGAACAAAATACGAGAAGCAGTAAAAAACGTTCTAAAAGAAAATCAATAAAATGGTTCATTATAAT
TCCATTGTTCTTACTTATTTTTGGAGGAGTAGGATATGGATCGTTAATATATAATAAAGCAAAAGCAGTAGTAAGTGACG
CGTATGCACAAATTGATAAGTCATCGAAGCGTGATAAAGAAGTTGAACCTTTAAAGGATAACATCTCTATTTTAATTATG
GGTGTAGACGGTAGTGAAATGAGAAAAAGTCAATATGGTGAAGCCGTTCGCACAGATGCACTTTTATTAGCAACAATTAA
TAAAGATGATAAATCAGTTAAATTAGTAAGTATTCCGCGTGATTCTCGTGTATATATTCCATCTAGAAAAAAATTAGATA
AAATTACACATGCACACGTATTTGGTGGTGTTGAAAGTACACGCGATACGGTGGAAAGATTTTTAAATGTTCCTGTTGAT
TATTATGTGAAGTTTAACTTTGAGTCATTCGTACAAATTGTTGATTCACTTGGTGGTATTGATATCGATGTACCAGTTAC
TTTCACTGAACAAGATAGTAAAGACCAAGCAGGTATGATTCATTTAGAGAAAGGCTACCAACATTTAAATGGAGAACAAG
CACTTGCGCTTGCAAGAACACGTAAAATTGATAGTGATGCAATGCGTGGTCAAAGACAACAACTTGTAATTGAAGCAATT
GCCAAAAAAGCGATGTCTGTCCAATCAATTAGCAAAATGGGCTCTTTACTGGATGCAGTTGATAAAAATATGAAAACGAA
CTTAACTTTCGATGATATGCTTGCTATTACGAAAAATATGGCAGGATCTAATTTAGAAATGGAAAAAATGCAAATAGAAG
GTACGGATAAACGTATCGGAGGTATTTATTATTACATTCCAAACGAAAAAAATGTAAAAGACATTTCAAATAAATTGAAT
CAGCATCTAGGTGTAACACCAAAATCAGTTCGAAATGAATAA

Upstream 100 bases:

>100_bases
ATGTAACCTTACAAAATTGTAAGGTAATTGAAAGGAAATTCAATATGAAGATTACTAGACATACATTATACTAGGGAAAG
AGAAAGAGAGGCGAATGGTT

Downstream 100 bases:

>100_bases
TAAAAAAGATTGGCTTCTGCCAATCTTTTTTTATCGCGATTTGTAACTTTTCTGTAACGATTTTTTATTGTAGAAAAATT
ATACTCATATGTATGAGAAT

Product: LytR family transcription antiterminator

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 333; Mature: 332

Protein sequence:

>333_residues
MSSELEQNTRSSKKRSKRKSIKWFIIIPLFLLIFGGVGYGSLIYNKAKAVVSDAYAQIDKSSKRDKEVEPLKDNISILIM
GVDGSEMRKSQYGEAVRTDALLLATINKDDKSVKLVSIPRDSRVYIPSRKKLDKITHAHVFGGVESTRDTVERFLNVPVD
YYVKFNFESFVQIVDSLGGIDIDVPVTFTEQDSKDQAGMIHLEKGYQHLNGEQALALARTRKIDSDAMRGQRQQLVIEAI
AKKAMSVQSISKMGSLLDAVDKNMKTNLTFDDMLAITKNMAGSNLEMEKMQIEGTDKRIGGIYYYIPNEKNVKDISNKLN
QHLGVTPKSVRNE

Sequences:

>Translated_333_residues
MSSELEQNTRSSKKRSKRKSIKWFIIIPLFLLIFGGVGYGSLIYNKAKAVVSDAYAQIDKSSKRDKEVEPLKDNISILIM
GVDGSEMRKSQYGEAVRTDALLLATINKDDKSVKLVSIPRDSRVYIPSRKKLDKITHAHVFGGVESTRDTVERFLNVPVD
YYVKFNFESFVQIVDSLGGIDIDVPVTFTEQDSKDQAGMIHLEKGYQHLNGEQALALARTRKIDSDAMRGQRQQLVIEAI
AKKAMSVQSISKMGSLLDAVDKNMKTNLTFDDMLAITKNMAGSNLEMEKMQIEGTDKRIGGIYYYIPNEKNVKDISNKLN
QHLGVTPKSVRNE
>Mature_332_residues
SSELEQNTRSSKKRSKRKSIKWFIIIPLFLLIFGGVGYGSLIYNKAKAVVSDAYAQIDKSSKRDKEVEPLKDNISILIMG
VDGSEMRKSQYGEAVRTDALLLATINKDDKSVKLVSIPRDSRVYIPSRKKLDKITHAHVFGGVESTRDTVERFLNVPVDY
YVKFNFESFVQIVDSLGGIDIDVPVTFTEQDSKDQAGMIHLEKGYQHLNGEQALALARTRKIDSDAMRGQRQQLVIEAIA
KKAMSVQSISKMGSLLDAVDKNMKTNLTFDDMLAITKNMAGSNLEMEKMQIEGTDKRIGGIYYYIPNEKNVKDISNKLNQ
HLGVTPKSVRNE

Specific function: Unknown

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 37421; Mature: 37289

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSELEQNTRSSKKRSKRKSIKWFIIIPLFLLIFGGVGYGSLIYNKAKAVVSDAYAQIDK
CCCHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
SSKRDKEVEPLKDNISILIMGVDGSEMRKSQYGEAVRTDALLLATINKDDKSVKLVSIPR
CCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCHHHHCCEEEEEEECCCCCCEEEEECCC
DSRVYIPSRKKLDKITHAHVFGGVESTRDTVERFLNVPVDYYVKFNFESFVQIVDSLGGI
CCEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHCCC
DIDVPVTFTEQDSKDQAGMIHLEKGYQHLNGEQALALARTRKIDSDAMRGQRQQLVIEAI
EEEEEEEECCCCCCCCCCEEEEHHCHHHCCCHHHHHHHHHHCCCHHHHCCHHHHHHHHHH
AKKAMSVQSISKMGSLLDAVDKNMKTNLTFDDMLAITKNMAGSNLEMEKMQIEGTDKRIG
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCEEC
GIYYYIPNEKNVKDISNKLNQHLGVTPKSVRNE
EEEEEECCCCCHHHHHHHHHHHCCCCCHHHCCC
>Mature Secondary Structure 
SSELEQNTRSSKKRSKRKSIKWFIIIPLFLLIFGGVGYGSLIYNKAKAVVSDAYAQIDK
CCHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
SSKRDKEVEPLKDNISILIMGVDGSEMRKSQYGEAVRTDALLLATINKDDKSVKLVSIPR
CCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCHHHHCCEEEEEEECCCCCCEEEEECCC
DSRVYIPSRKKLDKITHAHVFGGVESTRDTVERFLNVPVDYYVKFNFESFVQIVDSLGGI
CCEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHCCC
DIDVPVTFTEQDSKDQAGMIHLEKGYQHLNGEQALALARTRKIDSDAMRGQRQQLVIEAI
EEEEEEEECCCCCCCCCCEEEEHHCHHHCCCHHHHHHHHHHCCCHHHHCCHHHHHHHHHH
AKKAMSVQSISKMGSLLDAVDKNMKTNLTFDDMLAITKNMAGSNLEMEKMQIEGTDKRIG
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCEEC
GIYYYIPNEKNVKDISNKLNQHLGVTPKSVRNE
EEEEEECCCCCHHHHHHHHHHHCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7816834 [H]