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The map label for this gene is yvbU [H]

Identifier: 49184790

GI number: 49184790

Start: 1803411

End: 1804280

Strand: Direct

Name: yvbU [H]

Synonym: BAS1778

Alternate gene names: 49184790

Gene position: 1803411-1804280 (Clockwise)

Preceding gene: 49184787

Following gene: 49184791

Centisome position: 34.49

GC content: 36.9

Gene sequence:

>870_bases
ATGACCATTACACAACTGCAAGTATTAATAAAAACTATTGAGTTAGGTAGTTTTACGAAGGCAGCTCGGGTGTTAAATAT
GACGCAGCCAGCTGTAAGTCATGCGATTTCAAGTATTGAGTCAGAGTTAGGAGTTACGATTCTTATACGTGATAAACGAA
AAGGGTTAATTGTTACGGATGTAGGAAGCAGAATTCTTGTACATATTAGAGAGATTTTGAACGGTGTAGAGAAGATTGAA
CAAGAAGTTGCGATGGAGAAAGGACACGAAGTTGGGACGATTCGAATTGGGAGTTTTCCGAGTGCTTCTGCACATTTCTT
ACCCAAAATGATAAACCATTTTAAGGAGAAGTATCCGAACTTAGAAGTCGTTCTTTGTGAAGGAACGATTAAAGAAGTTG
AAGATTGGTTAGTATCGAGGGTTGTTGATATAGGGATTGTTATTTTACCTAATAAAGAGATGGAGATTGTTCCATTAACG
AAGGGGAAAATGGTTGTTATTTTAAGAGAGGATCATCCTCTTTGCAAGAAGAATGCTGTTACAATTCGTGATTTGGAGAA
TGAACCGATCATATTATGTAAGGGCGGATACGAACCACCTATTATCGATATGTTTAAACAAGTAAATGTACCACTTCGAG
CTGAGTATGTAATTTCGACAGTTACGACAGCTTTAAATATGATTCAAGAAGGGTTAGGCATTGCAATATTAGCTGAATTA
TCTTTAACGAATTTACCAAAAAATGTGCAAACGAGAGAATTGGAACCGCAAGTATGGAGAGAAATTGCTTTAGCTGTTCC
TTCATTAAGGGATTCTTCAATCGCTGTGCAGCTATTTATTGAAGAATTTCAGGCGCTATTTGCAGAATAA

Upstream 100 bases:

>100_bases
CACTGTAAGACCTCCTTGATGTTATTCATTTCACTATGATATGATATCGACTGTAATAAATAAAATGAATCTTTTTTATG
AGGAGTATAAGTGATTAGTT

Downstream 100 bases:

>100_bases
AAAGAGGTGTCTCGTATATTATAATGGGACACTTTTTAATTTACTTATAAAAAATATGTGAAAAGGATTGACTTATTTTT
TAGTTGTAACTATAATGATT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 288

Protein sequence:

>289_residues
MTITQLQVLIKTIELGSFTKAARVLNMTQPAVSHAISSIESELGVTILIRDKRKGLIVTDVGSRILVHIREILNGVEKIE
QEVAMEKGHEVGTIRIGSFPSASAHFLPKMINHFKEKYPNLEVVLCEGTIKEVEDWLVSRVVDIGIVILPNKEMEIVPLT
KGKMVVILREDHPLCKKNAVTIRDLENEPIILCKGGYEPPIIDMFKQVNVPLRAEYVISTVTTALNMIQEGLGIAILAEL
SLTNLPKNVQTRELEPQVWREIALAVPSLRDSSIAVQLFIEEFQALFAE

Sequences:

>Translated_289_residues
MTITQLQVLIKTIELGSFTKAARVLNMTQPAVSHAISSIESELGVTILIRDKRKGLIVTDVGSRILVHIREILNGVEKIE
QEVAMEKGHEVGTIRIGSFPSASAHFLPKMINHFKEKYPNLEVVLCEGTIKEVEDWLVSRVVDIGIVILPNKEMEIVPLT
KGKMVVILREDHPLCKKNAVTIRDLENEPIILCKGGYEPPIIDMFKQVNVPLRAEYVISTVTTALNMIQEGLGIAILAEL
SLTNLPKNVQTRELEPQVWREIALAVPSLRDSSIAVQLFIEEFQALFAE
>Mature_288_residues
TITQLQVLIKTIELGSFTKAARVLNMTQPAVSHAISSIESELGVTILIRDKRKGLIVTDVGSRILVHIREILNGVEKIEQ
EVAMEKGHEVGTIRIGSFPSASAHFLPKMINHFKEKYPNLEVVLCEGTIKEVEDWLVSRVVDIGIVILPNKEMEIVPLTK
GKMVVILREDHPLCKKNAVTIRDLENEPIILCKGGYEPPIIDMFKQVNVPLRAEYVISTVTTALNMIQEGLGIAILAELS
LTNLPKNVQTRELEPQVWREIALAVPSLRDSSIAVQLFIEEFQALFAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=248, Percent_Identity=26.6129032258064, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1790399, Length=248, Percent_Identity=28.6290322580645, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI157672245, Length=206, Percent_Identity=27.6699029126214, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788887, Length=275, Percent_Identity=26.5454545454545, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787530, Length=248, Percent_Identity=21.7741935483871, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788481, Length=273, Percent_Identity=26.3736263736264, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787601, Length=175, Percent_Identity=26.8571428571429, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1786401, Length=208, Percent_Identity=29.3269230769231, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1788748, Length=282, Percent_Identity=23.758865248227, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1789204, Length=290, Percent_Identity=23.7931034482759, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1788296, Length=246, Percent_Identity=25.2032520325203, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1787879, Length=245, Percent_Identity=24.0816326530612, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1788297, Length=255, Percent_Identity=25.0980392156863, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI87081904, Length=203, Percent_Identity=25.1231527093596, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790262, Length=277, Percent_Identity=22.3826714801444, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1789639, Length=126, Percent_Identity=30.1587301587302, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789506, Length=231, Percent_Identity=25.5411255411255, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789440, Length=119, Percent_Identity=36.1344537815126, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790208, Length=259, Percent_Identity=22.007722007722, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI2367136, Length=258, Percent_Identity=24.8062015503876, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32243; Mature: 32112

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTITQLQVLIKTIELGSFTKAARVLNMTQPAVSHAISSIESELGVTILIRDKRKGLIVTD
CCHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEEECCCCEEEEE
VGSRILVHIREILNGVEKIEQEVAMEKGHEVGTIRIGSFPSASAHFLPKMINHFKEKYPN
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCC
LEVVLCEGTIKEVEDWLVSRVVDIGIVILPNKEMEIVPLTKGKMVVILREDHPLCKKNAV
EEEEEECCCHHHHHHHHHHHHHHCCEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCE
TIRDLENEPIILCKGGYEPPIIDMFKQVNVPLRAEYVISTVTTALNMIQEGLGIAILAEL
EEEECCCCCEEEECCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEH
SLTNLPKNVQTRELEPQVWREIALAVPSLRDSSIAVQLFIEEFQALFAE
HHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TITQLQVLIKTIELGSFTKAARVLNMTQPAVSHAISSIESELGVTILIRDKRKGLIVTD
CHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEEECCCCEEEEE
VGSRILVHIREILNGVEKIEQEVAMEKGHEVGTIRIGSFPSASAHFLPKMINHFKEKYPN
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCC
LEVVLCEGTIKEVEDWLVSRVVDIGIVILPNKEMEIVPLTKGKMVVILREDHPLCKKNAV
EEEEEECCCHHHHHHHHHHHHHHCCEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCE
TIRDLENEPIILCKGGYEPPIIDMFKQVNVPLRAEYVISTVTTALNMIQEGLGIAILAEL
EEEECCCCCEEEECCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEH
SLTNLPKNVQTRELEPQVWREIALAVPSLRDSSIAVQLFIEEFQALFAE
HHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]