Click here to switch to the map view.

The map label for this gene is ynbA [H]

Identifier: 49184707

GI number: 49184707

Start: 1712346

End: 1713605

Strand: Direct

Name: ynbA [H]

Synonym: BAS1693

Alternate gene names: 49184707

Gene position: 1712346-1713605 (Clockwise)

Preceding gene: 49184706

Following gene: 49184710

Centisome position: 32.75

GC content: 36.19

Gene sequence:

>1260_bases
ATGGAAGAATTATTACAAAGAGCAGTTTTAGTTGGAGTAAATTTAGGTAATGAGGATGATTCTGCATATTCGATGGAAGA
GCTAACGAATCTTGCAGAAGCTTGTGATGTAGAGGTAATTGGACAAGTGACGCAAAATTTGCAACGTGTAAATCCATCCC
ATTATATTGGAAAAGGAAAGATTGAAGAAGTAGCAGCCTATGTAAATGAAGTAGATGCGAATATGGTCATCTTTAATGAC
GAATTATCTCCTTCGCAAATTCGAAATTTAGAAGCGGATTTAGATTGTAAAGTAATTGACCGTACCATATTAATTTTAGA
TATTTTTGCGCAACGTGCGAAAACGAAGGAAGCGCAGCTGCAAGTAGAGGTGGCCCACCTTCAGTATATGATGCCTCGTT
TAATTGGTCTTCGTGAGTCGTTAGGAAGACAGAGCGGCGGTGTTGGTACGAAAAATAAAGGTGTCGGTGAGAAGAAATTA
GAGTTGGATCGTCGTAAAATTGAAGAACAAATTTCAGTTTTAAATAAAGATTTAGAAGCTCTTGTTGCGCAGCGTCAAAC
GCAGCGAAAGCAACGTAAGAAAAATGAAATTCCTGTTGTAGCATTAGTAGGTTATACGAACGCAGGAAAATCAACGACCA
TGAATGCGATGCTTGAAATTTATAATGGGACAGAAGAAAAACAAGTATTTGAAAAAGATATGTTATTCGCGACGTTAGAA
ACATCGGTGCGAAATATTGATTTACCAGGTAATAAATCATTCTTATTAACAGATACAGTTGGATTTGTAAGTAAATTACC
GCATCATCTCGTCAAGGCGTTCCGTTCAACGTTAGAAGAGGTAGCGGAAGCAGACTTACTTATTCATGTTGTAGATTACG
CCAATCCAAATTATGAACAGTTAATTGATATTACAAATGAAACGTTAAAGAAAATTGGAGTAGAAAATATCCCAACCATT
TATGCTTATAACAAATCAGATATGGTAGATGTTGAAATTCCGAAAGTACAAGAAGACCGCGTTTATTTATCAGCGAAGAA
ACATGTTGGAATTGAAGAACTTGTCGAAATGATTCGCTCACACATTTATAAAGAGTATACGAAGTGTGAAATGTTAATTC
CGTATGATCAAGGACAGGTAGTTTCTTATTTCAATACTCATGCGCACGTTCTATCTACGAGTTATGAAAACGAAGGTACG
AAACTAGAAGTGGAATGTAAGACGAGCGATTACGAAAAATATAAGCGTTTTGCAATTTAA

Upstream 100 bases:

>100_bases
ACTTTCTTCTATTTCTTTGGTGAACCCTTATCCGTTTACGAAAACACAGGCAGCGACCTGTGTTTTTTATTTTACGTAAT
CGAAATGGAGGAATAAATAT

Downstream 100 bases:

>100_bases
GAAATAAGGCGATCCTAAAATGTTTTAGGATCGCCTTATTTCTTATTCTGTAATAGAGGCCCATTTATAAGAATAAATTC
CTGCAAATGGACGAACAACA

Product: GTP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 419

Protein sequence:

>419_residues
MEELLQRAVLVGVNLGNEDDSAYSMEELTNLAEACDVEVIGQVTQNLQRVNPSHYIGKGKIEEVAAYVNEVDANMVIFND
ELSPSQIRNLEADLDCKVIDRTILILDIFAQRAKTKEAQLQVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKL
ELDRRKIEEQISVLNKDLEALVAQRQTQRKQRKKNEIPVVALVGYTNAGKSTTMNAMLEIYNGTEEKQVFEKDMLFATLE
TSVRNIDLPGNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHVVDYANPNYEQLIDITNETLKKIGVENIPTI
YAYNKSDMVDVEIPKVQEDRVYLSAKKHVGIEELVEMIRSHIYKEYTKCEMLIPYDQGQVVSYFNTHAHVLSTSYENEGT
KLEVECKTSDYEKYKRFAI

Sequences:

>Translated_419_residues
MEELLQRAVLVGVNLGNEDDSAYSMEELTNLAEACDVEVIGQVTQNLQRVNPSHYIGKGKIEEVAAYVNEVDANMVIFND
ELSPSQIRNLEADLDCKVIDRTILILDIFAQRAKTKEAQLQVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKL
ELDRRKIEEQISVLNKDLEALVAQRQTQRKQRKKNEIPVVALVGYTNAGKSTTMNAMLEIYNGTEEKQVFEKDMLFATLE
TSVRNIDLPGNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHVVDYANPNYEQLIDITNETLKKIGVENIPTI
YAYNKSDMVDVEIPKVQEDRVYLSAKKHVGIEELVEMIRSHIYKEYTKCEMLIPYDQGQVVSYFNTHAHVLSTSYENEGT
KLEVECKTSDYEKYKRFAI
>Mature_419_residues
MEELLQRAVLVGVNLGNEDDSAYSMEELTNLAEACDVEVIGQVTQNLQRVNPSHYIGKGKIEEVAAYVNEVDANMVIFND
ELSPSQIRNLEADLDCKVIDRTILILDIFAQRAKTKEAQLQVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKL
ELDRRKIEEQISVLNKDLEALVAQRQTQRKQRKKNEIPVVALVGYTNAGKSTTMNAMLEIYNGTEEKQVFEKDMLFATLE
TSVRNIDLPGNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHVVDYANPNYEQLIDITNETLKKIGVENIPTI
YAYNKSDMVDVEIPKVQEDRVYLSAKKHVGIEELVEMIRSHIYKEYTKCEMLIPYDQGQVVSYFNTHAHVLSTSYENEGT
KLEVECKTSDYEKYKRFAI

Specific function: Unknown

COG id: COG2262

COG function: function code R; GTPases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI310124269, Length=207, Percent_Identity=34.2995169082126, Blast_Score=120, Evalue=3e-27,
Organism=Homo sapiens, GI310124267, Length=207, Percent_Identity=34.2995169082126, Blast_Score=120, Evalue=3e-27,
Organism=Homo sapiens, GI310124171, Length=207, Percent_Identity=34.2995169082126, Blast_Score=120, Evalue=3e-27,
Organism=Homo sapiens, GI310124169, Length=207, Percent_Identity=34.2995169082126, Blast_Score=120, Evalue=3e-27,
Organism=Homo sapiens, GI310133118, Length=230, Percent_Identity=33.0434782608696, Blast_Score=119, Evalue=4e-27,
Organism=Homo sapiens, GI310133116, Length=215, Percent_Identity=33.953488372093, Blast_Score=119, Evalue=7e-27,
Organism=Escherichia coli, GI1790615, Length=415, Percent_Identity=37.3493975903614, Blast_Score=273, Evalue=1e-74,
Organism=Caenorhabditis elegans, GI17561038, Length=299, Percent_Identity=32.1070234113712, Blast_Score=128, Evalue=6e-30,
Organism=Drosophila melanogaster, GI24650079, Length=361, Percent_Identity=29.0858725761773, Blast_Score=121, Evalue=7e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016496
- InterPro:   IPR006073
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 47542; Mature: 47542

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEELLQRAVLVGVNLGNEDDSAYSMEELTNLAEACDVEVIGQVTQNLQRVNPSHYIGKGK
CHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCH
IEEVAAYVNEVDANMVIFNDELSPSQIRNLEADLDCKVIDRTILILDIFAQRAKTKEAQL
HHHHHHHHHHCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHH
QVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKLELDRRKIEEQISVLNKDLEA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LVAQRQTQRKQRKKNEIPVVALVGYTNAGKSTTMNAMLEIYNGTEEKQVFEKDMLFATLE
HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
TSVRNIDLPGNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHVVDYANPNYEQ
HHHHEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHH
LIDITNETLKKIGVENIPTIYAYNKSDMVDVEIPKVQEDRVYLSAKKHVGIEELVEMIRS
HHHHHHHHHHHCCCCCCCEEEEECCCCEEEEECCCCCCCCEEEEHHHCCCHHHHHHHHHH
HIYKEYTKCEMLIPYDQGQVVSYFNTHAHVLSTSYENEGTKLEVECKTSDYEKYKRFAI
HHHHHHHHCEEEEECCCCCEEEECCCHHHHEECCCCCCCCEEEEEECCCCHHHHHHCCC
>Mature Secondary Structure
MEELLQRAVLVGVNLGNEDDSAYSMEELTNLAEACDVEVIGQVTQNLQRVNPSHYIGKGK
CHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCH
IEEVAAYVNEVDANMVIFNDELSPSQIRNLEADLDCKVIDRTILILDIFAQRAKTKEAQL
HHHHHHHHHHCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHH
QVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKLELDRRKIEEQISVLNKDLEA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LVAQRQTQRKQRKKNEIPVVALVGYTNAGKSTTMNAMLEIYNGTEEKQVFEKDMLFATLE
HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
TSVRNIDLPGNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHVVDYANPNYEQ
HHHHEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHH
LIDITNETLKKIGVENIPTIYAYNKSDMVDVEIPKVQEDRVYLSAKKHVGIEELVEMIRS
HHHHHHHHHHHCCCCCCCEEEEECCCCEEEEECCCCCCCCEEEEHHHCCCHHHHHHHHHH
HIYKEYTKCEMLIPYDQGQVVSYFNTHAHVLSTSYENEGTKLEVECKTSDYEKYKRFAI
HHHHHHHHCEEEEECCCCCEEEECCCHHHHEECCCCCCCCEEEEEECCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]