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The map label for this gene is ydfH [H]

Identifier: 49184644

GI number: 49184644

Start: 1647596

End: 1648267

Strand: Reverse

Name: ydfH [H]

Synonym: BAS1630

Alternate gene names: 49184644

Gene position: 1648267-1647596 (Counterclockwise)

Preceding gene: 49184645

Following gene: 49184642

Centisome position: 31.52

GC content: 33.18

Gene sequence:

>672_bases
ATGCCTATCCCTCAAAATTATAAAAAACAAGGAAGAGTTTCGGCAAAATCACTTGTTTTAAATCAACTACAAGATTGGAT
TATTGAAGGTGTACTGAAGCCCGATGAAAAAATTAATGATGGGGAATTGGCTGAAGCACTAGGAGTAAGTAGAACACCTG
TAAGAGAAGCACTTCAAATATTAGAGCTTTCTGGATTAGTGGAAATGGTACCTGGGCAAAAAACAAAAATTGCTCCTATT
AAGTTAGACGACATACCAACTATTTATGAAACGATGGCTGGTCTTCACTCTATTATAGGTAAGCAAGCACTTCAACACAC
TACAGAAGCTGATTTGAAACTACTTTCTGAAATAAATAATGATTTTCAGTACTCTATAGAGAAAAAAAACGCAAAACAAG
CTTTAGAATTAGATATACAATTTCACAATGTAATTTCTTCTATTGCTAAAAATCAATATATTGAACCCTTTCTAGAAAAT
ATGCAGCTTCACGTTTTACGCCTTGAATATTTATTTTTCCAAAACTTTGTTCCAGCAAGTCAATCTATTGATGAACATCA
CGCTATCATTCAAGCACTGCAGAAGCAGGATGAAAAACAAATGGAACAAATGATGACTCAAAACTGGCTCCGTCCAATGA
AAGAAATACAAAAAATAATTTCTACGAAATAA

Upstream 100 bases:

>100_bases
ATGGTGCTCATCTTAAGTCAAAAACCAGATGAAGGGAAACCAGAATTAAAGCTTGTTCATGAGAAAAAGGAAAATATACA
ATGAAAGGATTGAATTCACT

Downstream 100 bases:

>100_bases
AAAGAGAGCTGGCTACGATTTTATGTAGCCAGCTCTCTTTTTACTAATATATATAACTATGCCTGAATATCTGCATAATC
TTCCATATCCTCGTACTCTT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MPIPQNYKKQGRVSAKSLVLNQLQDWIIEGVLKPDEKINDGELAEALGVSRTPVREALQILELSGLVEMVPGQKTKIAPI
KLDDIPTIYETMAGLHSIIGKQALQHTTEADLKLLSEINNDFQYSIEKKNAKQALELDIQFHNVISSIAKNQYIEPFLEN
MQLHVLRLEYLFFQNFVPASQSIDEHHAIIQALQKQDEKQMEQMMTQNWLRPMKEIQKIISTK

Sequences:

>Translated_223_residues
MPIPQNYKKQGRVSAKSLVLNQLQDWIIEGVLKPDEKINDGELAEALGVSRTPVREALQILELSGLVEMVPGQKTKIAPI
KLDDIPTIYETMAGLHSIIGKQALQHTTEADLKLLSEINNDFQYSIEKKNAKQALELDIQFHNVISSIAKNQYIEPFLEN
MQLHVLRLEYLFFQNFVPASQSIDEHHAIIQALQKQDEKQMEQMMTQNWLRPMKEIQKIISTK
>Mature_222_residues
PIPQNYKKQGRVSAKSLVLNQLQDWIIEGVLKPDEKINDGELAEALGVSRTPVREALQILELSGLVEMVPGQKTKIAPIK
LDDIPTIYETMAGLHSIIGKQALQHTTEADLKLLSEINNDFQYSIEKKNAKQALELDIQFHNVISSIAKNQYIEPFLENM
QLHVLRLEYLFFQNFVPASQSIDEHHAIIQALQKQDEKQMEQMMTQNWLRPMKEIQKIISTK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=182, Percent_Identity=26.9230769230769, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25556; Mature: 25425

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIPQNYKKQGRVSAKSLVLNQLQDWIIEGVLKPDEKINDGELAEALGVSRTPVREALQI
CCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCHHHHHHH
LELSGLVEMVPGQKTKIAPIKLDDIPTIYETMAGLHSIIGKQALQHTTEADLKLLSEINN
HHHHHHHHHCCCCCCEECCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DFQYSIEKKNAKQALELDIQFHNVISSIAKNQYIEPFLENMQLHVLRLEYLFFQNFVPAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
QSIDEHHAIIQALQKQDEKQMEQMMTQNWLRPMKEIQKIISTK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PIPQNYKKQGRVSAKSLVLNQLQDWIIEGVLKPDEKINDGELAEALGVSRTPVREALQI
CCCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCHHHHHHH
LELSGLVEMVPGQKTKIAPIKLDDIPTIYETMAGLHSIIGKQALQHTTEADLKLLSEINN
HHHHHHHHHCCCCCCEECCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DFQYSIEKKNAKQALELDIQFHNVISSIAKNQYIEPFLENMQLHVLRLEYLFFQNFVPAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
QSIDEHHAIIQALQKQDEKQMEQMMTQNWLRPMKEIQKIISTK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]