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The map label for this gene is rbcR [H]

Identifier: 49184623

GI number: 49184623

Start: 1627005

End: 1627898

Strand: Reverse

Name: rbcR [H]

Synonym: BAS1609

Alternate gene names: 49184623

Gene position: 1627898-1627005 (Counterclockwise)

Preceding gene: 49184629

Following gene: 49184620

Centisome position: 31.13

GC content: 32.21

Gene sequence:

>894_bases
ATGAATCTCTTAAAATTAGAAATTGTAGTGCTTATTAAGAAATACAAAAAGCTTACGATCGTTGCAGAAAAACTAGGTGT
TAAACAACCTACTATTACATTCCATATAAAAAGCTTAGAAGAGGAACTCGGTGTATCTTTATTCGAATTACGTTCGGGAA
GGTATTTCTTAACAGAGGCTGGTGAGGCGTTGCATCATTATGCTTGTAAAATAGATGCACTTATGAAAGAGGCTAGACGG
GTCACGCAAGAGTTTAAAGATTTTCATAAAGGCGCTATAACAATTGGCGCTAGCTATGTACCAGCGACTTATCTTTTACC
AGAAATTGTTTATCAATTTCAATGTGAATTTCCAAATATAAAAATAACACTTATGGTAAAAACAGCTCCTGAAATTAGAA
CGATGCTACAAAATCATGAAATTAATCTCGGTGTAATTTCCGCAGCACCGTTTGATGAATCACTTTTAAAACAGACGAAT
GTAATGCCTGATACACTTGTTCTTGCTTTCTCCAAAGAACATCATTTTTCAAAAAAAGAAAATGTATCATTACAAGATAT
CGAAAAGGAACGAATATTACTACATCGTAATCCATCTACTACGAGAGATTTACTTACAAAATGGATGTTAGCTCATAACA
TTACATTCCAATCTGAAATTGAATTAGATTCATTAGAAACGATGAAACAAATTTTAAAATACGGTAATGGAGTTGCCTTT
ATTTCTAAACTTGCTATTGAACAAGAAGTACAACGAAATGAACTACGCTACATACCGATCCCTGAATTTGAATTTCAACG
TAACATTTATACGATTCATCATGAAGACAGATGGAATTCTAAAATTATTTCTTTTTTACTACAGAGTATCACTTCTTATG
CAGAAAAAAGTTAA

Upstream 100 bases:

>100_bases
ATGTTAATGTACTGTAAAGATTAAATTAAAAAACTTCTAATAAACTATTTATTTCTATAGATTTTTTCTATAGTTAAAAT
AAAAAAGGCGGCAATTCATA

Downstream 100 bases:

>100_bases
AAGGCTGTCGTTATACACGACAGCCTTTTACACTATGAATCTATTTATTTTTCTTCGCTTCAATTTTTGCTTGTGCCTCT
TCAGCCTTATCTAATGCTTC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MNLLKLEIVVLIKKYKKLTIVAEKLGVKQPTITFHIKSLEEELGVSLFELRSGRYFLTEAGEALHHYACKIDALMKEARR
VTQEFKDFHKGAITIGASYVPATYLLPEIVYQFQCEFPNIKITLMVKTAPEIRTMLQNHEINLGVISAAPFDESLLKQTN
VMPDTLVLAFSKEHHFSKKENVSLQDIEKERILLHRNPSTTRDLLTKWMLAHNITFQSEIELDSLETMKQILKYGNGVAF
ISKLAIEQEVQRNELRYIPIPEFEFQRNIYTIHHEDRWNSKIISFLLQSITSYAEKS

Sequences:

>Translated_297_residues
MNLLKLEIVVLIKKYKKLTIVAEKLGVKQPTITFHIKSLEEELGVSLFELRSGRYFLTEAGEALHHYACKIDALMKEARR
VTQEFKDFHKGAITIGASYVPATYLLPEIVYQFQCEFPNIKITLMVKTAPEIRTMLQNHEINLGVISAAPFDESLLKQTN
VMPDTLVLAFSKEHHFSKKENVSLQDIEKERILLHRNPSTTRDLLTKWMLAHNITFQSEIELDSLETMKQILKYGNGVAF
ISKLAIEQEVQRNELRYIPIPEFEFQRNIYTIHHEDRWNSKIISFLLQSITSYAEKS
>Mature_297_residues
MNLLKLEIVVLIKKYKKLTIVAEKLGVKQPTITFHIKSLEEELGVSLFELRSGRYFLTEAGEALHHYACKIDALMKEARR
VTQEFKDFHKGAITIGASYVPATYLLPEIVYQFQCEFPNIKITLMVKTAPEIRTMLQNHEINLGVISAAPFDESLLKQTN
VMPDTLVLAFSKEHHFSKKENVSLQDIEKERILLHRNPSTTRDLLTKWMLAHNITFQSEIELDSLETMKQILKYGNGVAF
ISKLAIEQEVQRNELRYIPIPEFEFQRNIYTIHHEDRWNSKIISFLLQSITSYAEKS

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=277, Percent_Identity=24.9097472924188, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1790399, Length=273, Percent_Identity=23.4432234432234, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI157672245, Length=270, Percent_Identity=23.7037037037037, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1788296, Length=248, Percent_Identity=27.8225806451613, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI87082132, Length=272, Percent_Identity=23.5294117647059, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI145693105, Length=274, Percent_Identity=23.3576642335766, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788748, Length=246, Percent_Identity=19.1056910569106, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786401, Length=301, Percent_Identity=22.9235880398671, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1787879, Length=263, Percent_Identity=22.0532319391635, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI1788626, Length=272, Percent_Identity=25.3676470588235, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34440; Mature: 34440

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLLKLEIVVLIKKYKKLTIVAEKLGVKQPTITFHIKSLEEELGVSLFELRSGRYFLTEA
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCEEEECCCCCEEEEHH
GEALHHYACKIDALMKEARRVTQEFKDFHKGAITIGASYVPATYLLPEIVYQFQCEFPNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHCCCCCCE
KITLMVKTAPEIRTMLQNHEINLGVISAAPFDESLLKQTNVMPDTLVLAFSKEHHFSKKE
EEEEEEECCHHHHHHHHCCCCCEEEEECCCCCHHHHHHCCCCCCCEEEEECCCCCCCCCC
NVSLQDIEKERILLHRNPSTTRDLLTKWMLAHNITFQSEIELDSLETMKQILKYGNGVAF
CCCHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHH
ISKLAIEQEVQRNELRYIPIPEFEFQRNIYTIHHEDRWNSKIISFLLQSITSYAEKS
HHHHHHHHHHHHCCCEECCCCCHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNLLKLEIVVLIKKYKKLTIVAEKLGVKQPTITFHIKSLEEELGVSLFELRSGRYFLTEA
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCEEEECCCCCEEEEHH
GEALHHYACKIDALMKEARRVTQEFKDFHKGAITIGASYVPATYLLPEIVYQFQCEFPNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHCCCCCCE
KITLMVKTAPEIRTMLQNHEINLGVISAAPFDESLLKQTNVMPDTLVLAFSKEHHFSKKE
EEEEEEECCHHHHHHHHCCCCCEEEEECCCCCHHHHHHCCCCCCCEEEEECCCCCCCCCC
NVSLQDIEKERILLHRNPSTTRDLLTKWMLAHNITFQSEIELDSLETMKQILKYGNGVAF
CCCHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHH
ISKLAIEQEVQRNELRYIPIPEFEFQRNIYTIHHEDRWNSKIISFLLQSITSYAEKS
HHHHHHHHHHHHCCCEECCCCCHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA