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The map label for this gene is 49184196

Identifier: 49184196

GI number: 49184196

Start: 1228266

End: 1228475

Strand: Direct

Name: 49184196

Synonym: BAS1178

Alternate gene names: NA

Gene position: 1228266-1228475 (Clockwise)

Preceding gene: 49184190

Following gene: 49184197

Centisome position: 23.49

GC content: 33.33

Gene sequence:

>210_bases
TTGGAAAATAAAATGGTCGAATACCGAAAAAAATTTGGACTATCTCAAGAAAAATTGGCTGAGAAACTTGGCGTTTCCAG
ACAAACCATCATTTCAATTGAAAAAGGAAAATACGATCCATCACTTCCGTTAGCATTTGAAATAGCAAAAACATTTCAGA
CAACGATAGAACATGTATTTATTTATGAAGGAAAAGAAGGGGAGGAGTAA

Upstream 100 bases:

>100_bases
TATAAATAGAGTGAAACAAACTAAAGTATATGTAAAGGGAACTTGATGTAAAGGTTACTTTACATATATACTCGGTGTAA
GGGAGGAGGGAGAAATTTCC

Downstream 100 bases:

>100_bases
AGATGAACTATTCACAAAAGTACTTCGTAATTATGGGGATTATTTTTCTATTTATGAGTGGATTTATGATACTAACAGGT
ATAATGACGCATTCTGCACC

Product: DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 69; Mature: 69

Protein sequence:

>69_residues
MENKMVEYRKKFGLSQEKLAEKLGVSRQTIISIEKGKYDPSLPLAFEIAKTFQTTIEHVFIYEGKEGEE

Sequences:

>Translated_69_residues
MENKMVEYRKKFGLSQEKLAEKLGVSRQTIISIEKGKYDPSLPLAFEIAKTFQTTIEHVFIYEGKEGEE
>Mature_69_residues
MENKMVEYRKKFGLSQEKLAEKLGVSRQTIISIEKGKYDPSLPLAFEIAKTFQTTIEHVFIYEGKEGEE

Specific function: Unknown

COG id: COG1476

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 7983; Mature: 7983

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENKMVEYRKKFGLSQEKLAEKLGVSRQTIISIEKGKYDPSLPLAFEIAKTFQTTIEHVF
CCCHHHHHHHHCCCCHHHHHHHHCCCCHHEEEECCCCCCCCCCHHHHHHHHHHHHHHEEE
IYEGKEGEE
EECCCCCCC
>Mature Secondary Structure
MENKMVEYRKKFGLSQEKLAEKLGVSRQTIISIEKGKYDPSLPLAFEIAKTFQTTIEHVF
CCCHHHHHHHHCCCCHHHHHHHHCCCCHHEEEECCCCCCCCCCHHHHHHHHHHHHHHEEE
IYEGKEGEE
EECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]