Click here to switch to the map view.

The map label for this gene is oppD [H]

Identifier: 49183652

GI number: 49183652

Start: 677157

End: 678104

Strand: Reverse

Name: oppD [H]

Synonym: BAS0627

Alternate gene names: 49183652

Gene position: 678104-677157 (Counterclockwise)

Preceding gene: 49183653

Following gene: 49183651

Centisome position: 12.97

GC content: 36.81

Gene sequence:

>948_bases
TTGAATATTTTCTCAACTTATACTTGTCAAACATTGTCAATTTATATTAAAATAACAACAACATACAAAATATTTAGTCT
TTTCAGAAAAGATGGAGGGATAGCCATGAAGAATCCACTTCTTCGCATTGAAAACTTACAGACTTCCTTTCGTATACAAG
ATCAATATCATGCCGCAGAGATGAATAAAGTACGCGGATCAAACATCGGCATGATTTTCCAAGAACCTCTTACAGCACTC
GATCCTCTTATGACAGTTGGAAAACAAATCGAAGAAAATTTAGACTACCACACAAGCCTTTCAAAAGTTGAAAAGAAAGA
ACGCACCTTAGAACTACTTCATCAAGTTGGTATTCCAAAACCAGAACTTACATATAAACAATACCCACACGAATTATCTG
GCGGAATGAGACAAAGAATTGTTATCGCAATTGCAATTGCTTGTAACCCAGCACTTATTATTGCAGATGAGCCAACAACG
GCTCTTGATGTAACTATCCAAGCACAAATTTTAGACTTACTAAAATCTATTCAAGAACAAACGAAAATGGGCATCATTTT
AATTACTCACGATTTAAGTGTTGTCGCAGAAACAGCCGATCGTATCGTCGTTATGTACGCTGGACAAGTTGTAGAAACAG
GAAAAGTTGAAGAGATTTTTAACAACCCTCTTCACCCATATACTCGTTCTCTATTAAACTCCATTCCATCTGCTTACGCT
GAAAAAGAAAAATTGCATGTTATTCAAGGTGTTGTACCGACGTTAGCTAAGTTACCTCGCACAGGTTGTCGCTTCCAAGC
ACGAATTCCATGGATTAGACCTGATCAACACGAGGAAAATCCAATTTTACATGAAGTAAAACCAAACCATTGGGTACGTT
GTACTTGCTACAAACATTTCAACTTCCAAGATAAGAAAGGAGATGACGTAACTCATGGCACTGCTTAA

Upstream 100 bases:

>100_bases
TTCTTACAAAAGATTTATTTCCCTCTCTTATATATGTTAGCGTTTTCAAAACACTCCAACTACTTATATACATGCATCCA
ATCTCTATATAAAAAGATTT

Downstream 100 bases:

>100_bases
AGTAGAAGATTTAAAAGTACACTTTCCAATTAAAGGTGGTGTTTTCGGTCGTACATTAGATTACGTTCGTGCTGTTGATG
GCGTAAGCTTCGAACTACAA

Product: ABC transporter nucleotide-binding protein

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MNIFSTYTCQTLSIYIKITTTYKIFSLFRKDGGIAMKNPLLRIENLQTSFRIQDQYHAAEMNKVRGSNIGMIFQEPLTAL
DPLMTVGKQIEENLDYHTSLSKVEKKERTLELLHQVGIPKPELTYKQYPHELSGGMRQRIVIAIAIACNPALIIADEPTT
ALDVTIQAQILDLLKSIQEQTKMGIILITHDLSVVAETADRIVVMYAGQVVETGKVEEIFNNPLHPYTRSLLNSIPSAYA
EKEKLHVIQGVVPTLAKLPRTGCRFQARIPWIRPDQHEENPILHEVKPNHWVRCTCYKHFNFQDKKGDDVTHGTA

Sequences:

>Translated_315_residues
MNIFSTYTCQTLSIYIKITTTYKIFSLFRKDGGIAMKNPLLRIENLQTSFRIQDQYHAAEMNKVRGSNIGMIFQEPLTAL
DPLMTVGKQIEENLDYHTSLSKVEKKERTLELLHQVGIPKPELTYKQYPHELSGGMRQRIVIAIAIACNPALIIADEPTT
ALDVTIQAQILDLLKSIQEQTKMGIILITHDLSVVAETADRIVVMYAGQVVETGKVEEIFNNPLHPYTRSLLNSIPSAYA
EKEKLHVIQGVVPTLAKLPRTGCRFQARIPWIRPDQHEENPILHEVKPNHWVRCTCYKHFNFQDKKGDDVTHGTA
>Mature_315_residues
MNIFSTYTCQTLSIYIKITTTYKIFSLFRKDGGIAMKNPLLRIENLQTSFRIQDQYHAAEMNKVRGSNIGMIFQEPLTAL
DPLMTVGKQIEENLDYHTSLSKVEKKERTLELLHQVGIPKPELTYKQYPHELSGGMRQRIVIAIAIACNPALIIADEPTT
ALDVTIQAQILDLLKSIQEQTKMGIILITHDLSVVAETADRIVVMYAGQVVETGKVEEIFNNPLHPYTRSLLNSIPSAYA
EKEKLHVIQGVVPTLAKLPRTGCRFQARIPWIRPDQHEENPILHEVKPNHWVRCTCYKHFNFQDKKGDDVTHGTA

Specific function: Part of the binding-protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system [H]

COG id: COG0444

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Escherichia coli, GI1789963, Length=265, Percent_Identity=45.2830188679245, Blast_Score=234, Evalue=8e-63,
Organism=Escherichia coli, GI145693107, Length=244, Percent_Identity=47.5409836065574, Blast_Score=231, Evalue=4e-62,
Organism=Escherichia coli, GI48994883, Length=235, Percent_Identity=46.8085106382979, Blast_Score=222, Evalue=2e-59,
Organism=Escherichia coli, GI1787759, Length=253, Percent_Identity=41.1067193675889, Blast_Score=198, Evalue=4e-52,
Organism=Escherichia coli, GI1787500, Length=239, Percent_Identity=43.5146443514644, Blast_Score=187, Evalue=1e-48,
Organism=Escherichia coli, GI1789962, Length=213, Percent_Identity=41.7840375586854, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI1787548, Length=222, Percent_Identity=41.4414414414414, Blast_Score=175, Evalue=3e-45,
Organism=Escherichia coli, GI1788506, Length=191, Percent_Identity=46.0732984293194, Blast_Score=174, Evalue=5e-45,
Organism=Escherichia coli, GI1787758, Length=201, Percent_Identity=41.7910447761194, Blast_Score=154, Evalue=6e-39,
Organism=Escherichia coli, GI1789890, Length=171, Percent_Identity=43.859649122807, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI1789032, Length=180, Percent_Identity=38.3333333333333, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI48994997, Length=177, Percent_Identity=34.4632768361582, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1787547, Length=168, Percent_Identity=31.547619047619, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1786398, Length=256, Percent_Identity=33.59375, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1789891, Length=151, Percent_Identity=38.4105960264901, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1788225, Length=165, Percent_Identity=35.7575757575758, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1788644, Length=200, Percent_Identity=30, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI87081791, Length=167, Percent_Identity=32.3353293413174, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1787089, Length=156, Percent_Identity=36.5384615384615, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787370, Length=167, Percent_Identity=30.5389221556886, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788761, Length=210, Percent_Identity=29.0476190476191, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1787029, Length=159, Percent_Identity=30.8176100628931, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1786872, Length=176, Percent_Identity=27.8409090909091, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789672, Length=167, Percent_Identity=29.940119760479, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1786563, Length=147, Percent_Identity=35.3741496598639, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI87081709, Length=177, Percent_Identity=25.9887005649718, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1787712, Length=170, Percent_Identity=28.2352941176471, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI87082267, Length=183, Percent_Identity=30.0546448087432, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI48994943, Length=135, Percent_Identity=36.2962962962963, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1790162, Length=159, Percent_Identity=27.0440251572327, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790467, Length=168, Percent_Identity=29.1666666666667, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788450, Length=133, Percent_Identity=29.3233082706767, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790739, Length=111, Percent_Identity=36.036036036036, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786703, Length=153, Percent_Identity=32.6797385620915, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787105, Length=195, Percent_Identity=29.2307692307692, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1786253, Length=154, Percent_Identity=28.5714285714286, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1786345, Length=129, Percent_Identity=30.2325581395349, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787164, Length=84, Percent_Identity=34.5238095238095, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787792, Length=124, Percent_Identity=33.8709677419355, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87081834, Length=108, Percent_Identity=37.037037037037, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786803, Length=93, Percent_Identity=34.4086021505376, Blast_Score=63, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17565938, Length=163, Percent_Identity=33.1288343558282, Blast_Score=66, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI193202349, Length=91, Percent_Identity=39.5604395604396, Blast_Score=64, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI25146777, Length=187, Percent_Identity=30.4812834224599, Blast_Score=64, Evalue=1e-10,
Organism=Saccharomyces cerevisiae, GI6324985, Length=216, Percent_Identity=31.0185185185185, Blast_Score=76, Evalue=8e-15,
Organism=Drosophila melanogaster, GI24641565, Length=92, Percent_Identity=45.6521739130435, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI28574533, Length=142, Percent_Identity=30.2816901408451, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28574744, Length=216, Percent_Identity=25.462962962963, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI23397593, Length=164, Percent_Identity=29.8780487804878, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR010066
- InterPro:   IPR013563 [H]

Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]

EC number: NA

Molecular weight: Translated: 35787; Mature: 35787

Theoretical pI: Translated: 7.96; Mature: 7.96

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIFSTYTCQTLSIYIKITTTYKIFSLFRKDGGIAMKNPLLRIENLQTSFRIQDQYHAAE
CCCCCCEEEEEEEEEEEEECHHHHHHHHHHCCCEEECCCCEEEECCCCEEEECHHHHHHH
MNKVRGSNIGMIFQEPLTALDPLMTVGKQIEENLDYHTSLSKVEKKERTLELLHQVGIPK
HHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC
PELTYKQYPHELSGGMRQRIVIAIAIACNPALIIADEPTTALDVTIQAQILDLLKSIQEQ
CCCCHHHCCHHHCCCHHEEEEEEEEEECCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHH
TKMGIILITHDLSVVAETADRIVVMYAGQVVETGKVEEIFNNPLHPYTRSLLNSIPSAYA
HHCEEEEEECCHHHHHHHHCEEEEEEECCEECCCCHHHHHCCCCCHHHHHHHHHHHHHHH
EKEKLHVIQGVVPTLAKLPRTGCRFQARIPWIRPDQHEENPILHEVKPNHWVRCTCYKHF
HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEEECCCCCEEEEEEEEEC
NFQDKKGDDVTHGTA
CCCCCCCCCCCCCCC
>Mature Secondary Structure
MNIFSTYTCQTLSIYIKITTTYKIFSLFRKDGGIAMKNPLLRIENLQTSFRIQDQYHAAE
CCCCCCEEEEEEEEEEEEECHHHHHHHHHHCCCEEECCCCEEEECCCCEEEECHHHHHHH
MNKVRGSNIGMIFQEPLTALDPLMTVGKQIEENLDYHTSLSKVEKKERTLELLHQVGIPK
HHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC
PELTYKQYPHELSGGMRQRIVIAIAIACNPALIIADEPTTALDVTIQAQILDLLKSIQEQ
CCCCHHHCCHHHCCCHHEEEEEEEEEECCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHH
TKMGIILITHDLSVVAETADRIVVMYAGQVVETGKVEEIFNNPLHPYTRSLLNSIPSAYA
HHCEEEEEECCHHHHHHHHCEEEEEEECCEECCCCHHHHHCCCCCHHHHHHHHHHHHHHH
EKEKLHVIQGVVPTLAKLPRTGCRFQARIPWIRPDQHEENPILHEVKPNHWVRCTCYKHF
HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEEECCCCCEEEEEEEEEC
NFQDKKGDDVTHGTA
CCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8244921; 11337471 [H]