Click here to switch to the map view.

The map label for this gene is cspR [H]

Identifier: 49183542

GI number: 49183542

Start: 545519

End: 546007

Strand: Direct

Name: cspR [H]

Synonym: BAS0516

Alternate gene names: 49183542

Gene position: 545519-546007 (Clockwise)

Preceding gene: 49183541

Following gene: 49183543

Centisome position: 10.43

GC content: 33.54

Gene sequence:

>489_bases
GTGGGAGTACATGTTGTTTTATATCAACCAGAAATTCCAGCAAATACGGGCAATATTGCTCGTACTTGTGCAGCAACTGG
AACAGAATTACATTTGATTAGACCGCTTGGATTTTCAACGGATGATAAAATGTTAAAGCGTGCAGGATTAGATTATTGGC
AGCACGTGAAAATTACGTATTATGATTCAATTGAAGAGTTTTACGAGAAAAATAAAGACGGTGAATTCTTCTATTTAACA
AAGTATGGTGAGAAAGCTCATACAGCGTTTGATTATAGCAAACGTGAGAAGGATTACTATTTTGTATTTGGAAGAGAAAC
AAACGGCTTACCAGCTAATGTAATCGAAGAAAACTTCGATCATTGTTTACGCATTCCAATGACTGATAAAGTGCGTTCAT
TAAATTTATCTAATACAGCAGCTATTTTAATTTATGAAGCATTCCGTCAACAAAATTATCCAGGATTAGATTTAGAAATT
GTTTATTAA

Upstream 100 bases:

>100_bases
CCACAAATGAAATATAAATTCTTTCATATTATTAATGGGTAGAGATTTTTCGCTCAAGTGGTATAATACGTAGTAGACAA
AAAACAGAGGTGAATATCGC

Downstream 100 bases:

>100_bases
AAGTCGCCATATGGCGACTTTTTTTCTAAAAATAAAAATAATATATAATCATACATTTAAAAAAGGGTACATATTCATAT
AAAATGGGATATATGAATAA

Product: RNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 161

Protein sequence:

>162_residues
MGVHVVLYQPEIPANTGNIARTCAATGTELHLIRPLGFSTDDKMLKRAGLDYWQHVKITYYDSIEEFYEKNKDGEFFYLT
KYGEKAHTAFDYSKREKDYYFVFGRETNGLPANVIEENFDHCLRIPMTDKVRSLNLSNTAAILIYEAFRQQNYPGLDLEI
VY

Sequences:

>Translated_162_residues
MGVHVVLYQPEIPANTGNIARTCAATGTELHLIRPLGFSTDDKMLKRAGLDYWQHVKITYYDSIEEFYEKNKDGEFFYLT
KYGEKAHTAFDYSKREKDYYFVFGRETNGLPANVIEENFDHCLRIPMTDKVRSLNLSNTAAILIYEAFRQQNYPGLDLEI
VY
>Mature_161_residues
GVHVVLYQPEIPANTGNIARTCAATGTELHLIRPLGFSTDDKMLKRAGLDYWQHVKITYYDSIEEFYEKNKDGEFFYLTK
YGEKAHTAFDYSKREKDYYFVFGRETNGLPANVIEENFDHCLRIPMTDKVRSLNLSNTAAILIYEAFRQQNYPGLDLEIV
Y

Specific function: Could methylate the ribose at the nucleotide 34 wobble position in tRNA [H]

COG id: COG0219

COG function: function code J; Predicted rRNA methylase (SpoU class)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family. TrmL subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790034, Length=154, Percent_Identity=46.1038961038961, Blast_Score=147, Evalue=5e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004440
- InterPro:   IPR016914
- InterPro:   IPR001537 [H]

Pfam domain/function: PF00588 SpoU_methylase [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 18827; Mature: 18696

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVHVVLYQPEIPANTGNIARTCAATGTELHLIRPLGFSTDDKMLKRAGLDYWQHVKITY
CCEEEEEECCCCCCCCCCCEEEEECCCCEEEEEECCCCCCHHHHHHHHCCCCHHEEEEEE
YDSIEEFYEKNKDGEFFYLTKYGEKAHTAFDYSKREKDYYFVFGRETNGLPANVIEENFD
EHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCC
HCLRIPMTDKVRSLNLSNTAAILIYEAFRQQNYPGLDLEIVY
CEEECCCCCCCEECCCCCCEEEEEEEHHHHCCCCCCEEEEEC
>Mature Secondary Structure 
GVHVVLYQPEIPANTGNIARTCAATGTELHLIRPLGFSTDDKMLKRAGLDYWQHVKITY
CEEEEEECCCCCCCCCCCEEEEECCCCEEEEEECCCCCCHHHHHHHHCCCCHHEEEEEE
YDSIEEFYEKNKDGEFFYLTKYGEKAHTAFDYSKREKDYYFVFGRETNGLPANVIEENFD
EHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCC
HCLRIPMTDKVRSLNLSNTAAILIYEAFRQQNYPGLDLEIVY
CEEECCCCCCCEECCCCCCEEEEEEEHHHHCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]