Click here to switch to the map view.

The map label for this gene is ybfM [H]

Identifier: 49183431

GI number: 49183431

Start: 436898

End: 437488

Strand: Direct

Name: ybfM [H]

Synonym: BAS0403

Alternate gene names: 49183431

Gene position: 436898-437488 (Clockwise)

Preceding gene: 49183429

Following gene: 49183434

Centisome position: 8.36

GC content: 36.04

Gene sequence:

>591_bases
ATGGAACAACATATTGGCGAGTTGATCGCACATTATGGGTATTTTGGAATTATTATAGCTTTGGCCGGTGGGATTGTTGG
ATTACCGATACCAGACGAGTTTTTATTGACCTTCGTTGGTTATAACGTTTCAAAAGGAGTTATGTCAGGAACTGCTGCGT
TTTTAAGTGGGATGGCTGGTGCGATGTTAGGGATTACATTAAGTTATATACTAGGCTTAAAACTTGGACTTCCTGTTTTA
AAAAAATATGGTCCGAAAATTAGAATTAAAGAACATCACATTGAAAAAACACATATTTTATTTGAAAAATATGGCCCATT
TCTTTTAATGATTGGTTACTTTATCCCGGGAGTACGTCATTTAACAGCATATTTTGCTGGGATGTCGAATTTAACAATTT
GGCGTTTTTGTTTGTACGCTTACGGTGGTGCGCTTATTTGGATCAGTGTTTTTATTGGACTTGGCTGGAAGTTAGGAGAG
AAGTGGCGTTTCGTTGAGTATAGTTTACATCATTATGGAATATGGATTTTATCTATTTCAGTAGTTGTTACATGTGTCGT
ATGGTTTTACATAAAGAAAAACCGCGAGTAG

Upstream 100 bases:

>100_bases
TTATAAAAACAATGTATAGTGAATATGTATACCATGTTTGTCTGAAAGATAGAAAGGGCACAATGTGGAATAACGATCGT
GCATAGGATGTGTCTTCCGA

Downstream 100 bases:

>100_bases
CGGTTTTTTTAGCTGAAGGCAATAAATAGTACACCAGCTGTAATAAAGACAACACCAATACCAGTCATAAAGTTTAACTT
TTCGCCGAGTATAATCATGG

Product: dedA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MEQHIGELIAHYGYFGIIIALAGGIVGLPIPDEFLLTFVGYNVSKGVMSGTAAFLSGMAGAMLGITLSYILGLKLGLPVL
KKYGPKIRIKEHHIEKTHILFEKYGPFLLMIGYFIPGVRHLTAYFAGMSNLTIWRFCLYAYGGALIWISVFIGLGWKLGE
KWRFVEYSLHHYGIWILSISVVVTCVVWFYIKKNRE

Sequences:

>Translated_196_residues
MEQHIGELIAHYGYFGIIIALAGGIVGLPIPDEFLLTFVGYNVSKGVMSGTAAFLSGMAGAMLGITLSYILGLKLGLPVL
KKYGPKIRIKEHHIEKTHILFEKYGPFLLMIGYFIPGVRHLTAYFAGMSNLTIWRFCLYAYGGALIWISVFIGLGWKLGE
KWRFVEYSLHHYGIWILSISVVVTCVVWFYIKKNRE
>Mature_196_residues
MEQHIGELIAHYGYFGIIIALAGGIVGLPIPDEFLLTFVGYNVSKGVMSGTAAFLSGMAGAMLGITLSYILGLKLGLPVL
KKYGPKIRIKEHHIEKTHILFEKYGPFLLMIGYFIPGVRHLTAYFAGMSNLTIWRFCLYAYGGALIWISVFIGLGWKLGE
KWRFVEYSLHHYGIWILSISVVVTCVVWFYIKKNRE

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1789481, Length=139, Percent_Identity=33.0935251798561, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 22070; Mature: 22070

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQHIGELIAHYGYFGIIIALAGGIVGLPIPDEFLLTFVGYNVSKGVMSGTAAFLSGMAG
CHHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
AMLGITLSYILGLKLGLPVLKKYGPKIRIKEHHIEKTHILFEKYGPFLLMIGYFIPGVRH
HHHHHHHHHHHHHHHCHHHHHHCCCCEEEHHHHHHHHHHHHHHHCHHHHHHHHHHCHHHH
LTAYFAGMSNLTIWRFCLYAYGGALIWISVFIGLGWKLGEKWRFVEYSLHHYGIWILSIS
HHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCEEHEEEHHHHHHHHHHHHH
VVVTCVVWFYIKKNRE
HHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEQHIGELIAHYGYFGIIIALAGGIVGLPIPDEFLLTFVGYNVSKGVMSGTAAFLSGMAG
CHHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
AMLGITLSYILGLKLGLPVLKKYGPKIRIKEHHIEKTHILFEKYGPFLLMIGYFIPGVRH
HHHHHHHHHHHHHHHCHHHHHHCCCCEEEHHHHHHHHHHHHHHHCHHHHHHHHHHCHHHH
LTAYFAGMSNLTIWRFCLYAYGGALIWISVFIGLGWKLGEKWRFVEYSLHHYGIWILSIS
HHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCEEHEEEHHHHHHHHHHHHH
VVVTCVVWFYIKKNRE
HHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]