Definition | Bacillus anthracis str. Sterne chromosome, complete genome. |
---|---|
Accession | NC_005945 |
Length | 5,228,663 |
Click here to switch to the map view.
The map label for this gene is ykfB [H]
Identifier: 49183352
GI number: 49183352
Start: 348286
End: 349395
Strand: Reverse
Name: ykfB [H]
Synonym: BAS0324
Alternate gene names: 49183352
Gene position: 349395-348286 (Counterclockwise)
Preceding gene: 49183354
Following gene: 49183351
Centisome position: 6.68
GC content: 39.28
Gene sequence:
>1110_bases ATGAAAATTACAGCTATTCACCTTTACGCAATTCGTTTACCGCTTCGCGATCCGTTTGTTATTAGTTATGGTTCTTATTC TGATATGCCTTCTATTATCGTCAAAATGGAAACAGACGAAGGTATTATCGGTTACGGTGAAGGCGTTGCTGATGATCACG TCACAGGTGAATCATGGGAAAGTACTTTCCATATTTTAAAGCATACGCTAGCACCTGCACTAATCGGACAAAATCCAATG AATATAGAAAAAATACACGATATGATGGACAATACAATTTACGGTGTTCCAACAGCGAAAGCTGCGATTGATATTGCTTG TTTTGATATAATGGGTAAAAAATTAAATCAACCTGTATATCAATTAATTGGTGGACGATACCATGAAGAATTTCCTATCA CTCACGTATTAAGTATCGCAGATCCAGAAGAAATGGCCGAAGAAGCTGCCTCTATGATTCAGAAAGGTTACCAATCTTTC AAAATGAAAGTCGGTACAAATGTAAAAGAAGATGTAAAACGAATTGAAGCAGTACGTGAGCGTGTAGGAAATGACATCGC AATTCGTGTTGATGTAAACCAAGGTTGGAAAAATAGCGCCAACACATTAATGGCACTTCGTTCATTAGGACATTTAAACA TCGACTGGATTGAACAGCCTGTCATCGCAGACGATATTGACGCAATGGCTCACATTCGTTCGAAAACAGACCTTCCGCTT ATGATTGATGAAGGATTAAAGGGCTCTCGTGAAATGCGCCAAATTATTAATTTAGACGCGGCTGATAAAGTAAACATAAA ACTAATGAAATGCGGCGGCATATACCCAGCTGTAAAACTTGCTCATCAAGCTGAAATGGCAGGCATTGAATGCCAAGTTG GATCCATGGTCGAATCATCCGTTGCCTCTTCCGCGGGATTCCATGTCGCTTTTTCGAAAAAAATTATTACGAGCGTTGAA CTTACAGGTCCATTAAAATTCACGAAGGACATCGGAAACTTACATTACGACGTACCATTTATTCGCTTAAACGAAAAGCC AGGACTCGGCATTGAAATAAATGAAGATACACTACGAGAACTCACCGTCTTTCAAGACATTGTACGCTAA
Upstream 100 bases:
>100_bases ATCATCATTTCTCTAACTCCTTATCATTAATTAACGACTATTTAACGTCAACTATATCAAATGTATAAAACTATTGTAAA CAGGAAGGGGTCTCTACCTA
Downstream 100 bases:
>100_bases AGGAGGGCTAACGCATGACAGTTCTATACGAGGGCAGATTAAAACAAAATAACGAGCGATTTCACGTTACATTACTATCA CTAGAGTACATCGAACAAAT
Product: mandelate racemase/muconate lactonizing enzyme family protein
Products: Glyceraldehyde 3-phosphate; Pyruvate [C]
Alternate protein names: AE epimerase; AEE [H]
Number of amino acids: Translated: 369; Mature: 369
Protein sequence:
>369_residues MKITAIHLYAIRLPLRDPFVISYGSYSDMPSIIVKMETDEGIIGYGEGVADDHVTGESWESTFHILKHTLAPALIGQNPM NIEKIHDMMDNTIYGVPTAKAAIDIACFDIMGKKLNQPVYQLIGGRYHEEFPITHVLSIADPEEMAEEAASMIQKGYQSF KMKVGTNVKEDVKRIEAVRERVGNDIAIRVDVNQGWKNSANTLMALRSLGHLNIDWIEQPVIADDIDAMAHIRSKTDLPL MIDEGLKGSREMRQIINLDAADKVNIKLMKCGGIYPAVKLAHQAEMAGIECQVGSMVESSVASSAGFHVAFSKKIITSVE LTGPLKFTKDIGNLHYDVPFIRLNEKPGLGIEINEDTLRELTVFQDIVR
Sequences:
>Translated_369_residues MKITAIHLYAIRLPLRDPFVISYGSYSDMPSIIVKMETDEGIIGYGEGVADDHVTGESWESTFHILKHTLAPALIGQNPM NIEKIHDMMDNTIYGVPTAKAAIDIACFDIMGKKLNQPVYQLIGGRYHEEFPITHVLSIADPEEMAEEAASMIQKGYQSF KMKVGTNVKEDVKRIEAVRERVGNDIAIRVDVNQGWKNSANTLMALRSLGHLNIDWIEQPVIADDIDAMAHIRSKTDLPL MIDEGLKGSREMRQIINLDAADKVNIKLMKCGGIYPAVKLAHQAEMAGIECQVGSMVESSVASSAGFHVAFSKKIITSVE LTGPLKFTKDIGNLHYDVPFIRLNEKPGLGIEINEDTLRELTVFQDIVR >Mature_369_residues MKITAIHLYAIRLPLRDPFVISYGSYSDMPSIIVKMETDEGIIGYGEGVADDHVTGESWESTFHILKHTLAPALIGQNPM NIEKIHDMMDNTIYGVPTAKAAIDIACFDIMGKKLNQPVYQLIGGRYHEEFPITHVLSIADPEEMAEEAASMIQKGYQSF KMKVGTNVKEDVKRIEAVRERVGNDIAIRVDVNQGWKNSANTLMALRSLGHLNIDWIEQPVIADDIDAMAHIRSKTDLPL MIDEGLKGSREMRQIINLDAADKVNIKLMKCGGIYPAVKLAHQAEMAGIECQVGSMVESSVASSAGFHVAFSKKIITSVE LTGPLKFTKDIGNLHYDVPFIRLNEKPGLGIEINEDTLRELTVFQDIVR
Specific function: Catalyzes the epimerization of L-Ala-D-Glu to L-Ala-L- Glu and has probably a role in the metabolism of the murein peptide, of which L-Ala-D-Glu is a component. Is also able to catalyze the reverse reaction and the epimerization of the other Ala-X dipepti
COG id: COG4948
COG function: function code MR; L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mandelate racemase/muconate lactonizing enzyme family [H]
Homologues:
Organism=Escherichia coli, GI48994953, Length=389, Percent_Identity=26.4781491002571, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI87081876, Length=339, Percent_Identity=29.2035398230088, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI226510960, Length=346, Percent_Identity=23.121387283237, Blast_Score=69, Evalue=5e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013342 - InterPro: IPR013341 - InterPro: IPR001354 [H]
Pfam domain/function: PF01188 MR_MLE; PF02746 MR_MLE_N [H]
EC number: 4.1.2.21; 4.2.1.6 [C]
Molecular weight: Translated: 40962; Mature: 40962
Theoretical pI: Translated: 5.42; Mature: 5.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKITAIHLYAIRLPLRDPFVISYGSYSDMPSIIVKMETDEGIIGYGEGVADDHVTGESWE CEEEEEEEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCCEEECCCCCCCCCCCCCCHH STFHILKHTLAPALIGQNPMNIEKIHDMMDNTIYGVPTAKAAIDIACFDIMGKKLNQPVY HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHHHHCCHHH QLIGGRYHEEFPITHVLSIADPEEMAEEAASMIQKGYQSFKMKVGTNVKEDVKRIEAVRE HHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH RVGNDIAIRVDVNQGWKNSANTLMALRSLGHLNIDWIEQPVIADDIDAMAHIRSKTDLPL HCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHCCCCCCE MIDEGLKGSREMRQIINLDAADKVNIKLMKCGGIYPAVKLAHQAEMAGIECQVGSMVESS EECCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCEEEHHHHHHHH VASSAGFHVAFSKKIITSVELTGPLKFTKDIGNLHYDVPFIRLNEKPGLGIEINEDTLRE HHHCCCEEEEEHHHHHEEEEECCCCHHHHHHCCEEECCCEEEECCCCCCCEEECHHHHHH LTVFQDIVR HHHHHHHHC >Mature Secondary Structure MKITAIHLYAIRLPLRDPFVISYGSYSDMPSIIVKMETDEGIIGYGEGVADDHVTGESWE CEEEEEEEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCCEEECCCCCCCCCCCCCCHH STFHILKHTLAPALIGQNPMNIEKIHDMMDNTIYGVPTAKAAIDIACFDIMGKKLNQPVY HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHHHHCCHHH QLIGGRYHEEFPITHVLSIADPEEMAEEAASMIQKGYQSFKMKVGTNVKEDVKRIEAVRE HHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH RVGNDIAIRVDVNQGWKNSANTLMALRSLGHLNIDWIEQPVIADDIDAMAHIRSKTDLPL HCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHCCCCCCE MIDEGLKGSREMRQIINLDAADKVNIKLMKCGGIYPAVKLAHQAEMAGIECQVGSMVESS EECCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCEEEHHHHHHHH VASSAGFHVAFSKKIITSVELTGPLKFTKDIGNLHYDVPFIRLNEKPGLGIEINEDTLRE HHHCCCEEEEEHHHHHEEEEECCCCHHHHHHCCEEECCCEEEECCCCCCCEEECHHHHHH LTVFQDIVR HHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: 2-Dehydro-3-deoxy-D-galactonate 6-phosphate [C]
Specific reaction: 2-Dehydro-3-deoxy-D-galactonate 6-phosphate <==> Glyceraldehyde 3-phosphate + Pyruvate [C]
General reaction: elimination of H2O C-O bond; Cleavage [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]