Definition | Bacillus anthracis str. Sterne chromosome, complete genome. |
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Accession | NC_005945 |
Length | 5,228,663 |
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The map label for this gene is ydcA [H]
Identifier: 49183268
GI number: 49183268
Start: 237472
End: 238044
Strand: Reverse
Name: ydcA [H]
Synonym: BAS0235
Alternate gene names: 49183268
Gene position: 238044-237472 (Counterclockwise)
Preceding gene: 49183280
Following gene: 49183257
Centisome position: 4.55
GC content: 36.82
Gene sequence:
>573_bases ATGCTCATACCATCCGCCCGCATTTCCTTACAACCAATCGCCATCTCTTTACTTCTCATACAATTCATTATGATTATGTT AGGCGATTTTTTCCTCTTTCCTATGGCAGCTTATCATGAATATATCGCTAATGGAGAATGGTGGCGTCTCATAACTTCCC TGTTCGTACATGTAGACTTACAACATTTTCTTTCTAATAGTATTTGTTTATTCGTCCTTGGCTCTTCTATTGAAAAACAA CTAGGCCGCTTTTCTTTCATCATTATTTTTTTCCTTTCTGGCATTCTCGGAAATATTTTCTCTTATCTTATTATGCCCCA TGAATATATTCATGCCGGGGCATCTGGTGGTATTTTCGGATTGCTAGGTGCACAGTTATTTCTATTGTATAGCCGATATC GTTCTTCCAATCCAAAAGACATTGCTATTTTTTCAATCATGATATGTATATTACTACTATTCACTTTCTTCAATCCCTCT GCCAACCCTATCAGCCATTTAACAGGATTGGTCATTGGTGGTATTTGCACCCCTTTATTAATAAAAAAACTCGATGGTGC AGAGCTCATTTAA
Upstream 100 bases:
>100_bases ACAATCATTTCAAAATCCCCTTCTTCTATTTAGCTTTCTTTTTTCATATTGTAAGAATAACAGAGAATCTTTCTGATGCA AAAGGAGTGATACTCATAAC
Downstream 100 bases:
>100_bases TATAAAAGCTCGCACCATCGATAATTTCCACATCTGTTTGTTCACTTAAATCCCTCATAAGTTGAAATAAAGACTCATCC TTCATCTTCGCTTCAATCAT
Product: rhomboid family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 190; Mature: 190
Protein sequence:
>190_residues MLIPSARISLQPIAISLLLIQFIMIMLGDFFLFPMAAYHEYIANGEWWRLITSLFVHVDLQHFLSNSICLFVLGSSIEKQ LGRFSFIIIFFLSGILGNIFSYLIMPHEYIHAGASGGIFGLLGAQLFLLYSRYRSSNPKDIAIFSIMICILLLFTFFNPS ANPISHLTGLVIGGICTPLLIKKLDGAELI
Sequences:
>Translated_190_residues MLIPSARISLQPIAISLLLIQFIMIMLGDFFLFPMAAYHEYIANGEWWRLITSLFVHVDLQHFLSNSICLFVLGSSIEKQ LGRFSFIIIFFLSGILGNIFSYLIMPHEYIHAGASGGIFGLLGAQLFLLYSRYRSSNPKDIAIFSIMICILLLFTFFNPS ANPISHLTGLVIGGICTPLLIKKLDGAELI >Mature_190_residues MLIPSARISLQPIAISLLLIQFIMIMLGDFFLFPMAAYHEYIANGEWWRLITSLFVHVDLQHFLSNSICLFVLGSSIEKQ LGRFSFIIIFFLSGILGNIFSYLIMPHEYIHAGASGGIFGLLGAQLFLLYSRYRSSNPKDIAIFSIMICILLLFTFFNPS ANPISHLTGLVIGGICTPLLIKKLDGAELI
Specific function: Not Yet Known. [C]
COG id: COG0705
COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S54 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002610 - InterPro: IPR022764 [H]
Pfam domain/function: PF01694 Rhomboid [H]
EC number: NA
Molecular weight: Translated: 21236; Mature: 21236
Theoretical pI: Translated: 7.60; Mature: 7.60
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLIPSARISLQPIAISLLLIQFIMIMLGDFFLFPMAAYHEYIANGEWWRLITSLFVHVDL CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH QHFLSNSICLFVLGSSIEKQLGRFSFIIIFFLSGILGNIFSYLIMPHEYIHAGASGGIFG HHHHCCCCEEEHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHH LLGAQLFLLYSRYRSSNPKDIAIFSIMICILLLFTFFNPSANPISHLTGLVIGGICTPLL HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH IKKLDGAELI HHHCCCCCCC >Mature Secondary Structure MLIPSARISLQPIAISLLLIQFIMIMLGDFFLFPMAAYHEYIANGEWWRLITSLFVHVDL CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH QHFLSNSICLFVLGSSIEKQLGRFSFIIIFFLSGILGNIFSYLIMPHEYIHAGASGGIFG HHHHCCCCEEEHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHH LLGAQLFLLYSRYRSSNPKDIAIFSIMICILLLFTFFNPSANPISHLTGLVIGGICTPLL HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH IKKLDGAELI HHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9341680; 9384377 [H]