Definition | Bacillus anthracis str. Sterne chromosome, complete genome. |
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Accession | NC_005945 |
Length | 5,228,663 |
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The map label for this gene is rpoE [C]
Identifier: 49183204
GI number: 49183204
Start: 171381
End: 171872
Strand: Reverse
Name: rpoE [C]
Synonym: BAS0171
Alternate gene names: 49183204
Gene position: 171872-171381 (Counterclockwise)
Preceding gene: 49183205
Following gene: 49183203
Centisome position: 3.29
GC content: 30.49
Gene sequence:
>492_bases ATGGGAAAAGAAAATATATTGACCTCCTATCTTATCAATTTAGGGGAGAAAGTGTTCAAACTATTATTAGCGAAAGGGGC TATAAAAGAAGACGCAGAAGACATCATCCAAAATACTTTCTATAAAGTATATACGTTGCTAGATGACCTAACAGAGAATA ACATACGTCCATGGTTTTTTAGGGTTGCATTAAACGAATACATTGACTTGAAGAGAAAAAAAGAGCAACAGAACATCTAT TTAACTGAAGAGATTTATTCAAAATTACAATATACAGACCGAGAACTGGATGCTGTTTTAAATAAAGATGAGATTTTCTA TCTATTAAAAGATATAAAACTAGAATATAAAGAAGCCTTCTTTTTAAAGTATTATTACGATTTTACATATGAAGAAATTG CACTAATACTAGATATTCGAGTAAATAGCGTCAAACAAAAGTTACATCGTGCACGTAAAACAATTCATTCTACAGTAGGG GGAAAACCTTAA
Upstream 100 bases:
>100_bases TGTTATATGCCTTTTTTATTTGTATCAAGAACAAAACTTTAATTTAAGTGTATACATTTACTATTACCTATTCGTTGTAT AAGTGTAGGGAGGAAAAATG
Downstream 100 bases:
>100_bases TGGATACTTCTTTAAAAAATGCATTAAAAAAAGCGCAAAGGAAACAGTTACTTAAAATCATCATTACTTCTATTCTCGTT GTCATCATACTTATCCCTAT
Product: ECF subfamily RNA polymerase sigma factor
Products: NA
Alternate protein names: RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma-70 Factor; RNA Polymerase ECF-Type Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Subunit Ecf Family; ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma Factor SigY; RNA Polymerase Sigma-E Factor; AlteRNAtive RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70factor; RNA Polymerase ECF-Type Sigma Factor SigH; RNA Polymerase Factor Sigma C; Sigma Factor Sigma; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase ECF-Type Sigma Factor SigE; Sigma-70 Factor
Number of amino acids: Translated: 163; Mature: 162
Protein sequence:
>163_residues MGKENILTSYLINLGEKVFKLLLAKGAIKEDAEDIIQNTFYKVYTLLDDLTENNIRPWFFRVALNEYIDLKRKKEQQNIY LTEEIYSKLQYTDRELDAVLNKDEIFYLLKDIKLEYKEAFFLKYYYDFTYEEIALILDIRVNSVKQKLHRARKTIHSTVG GKP
Sequences:
>Translated_163_residues MGKENILTSYLINLGEKVFKLLLAKGAIKEDAEDIIQNTFYKVYTLLDDLTENNIRPWFFRVALNEYIDLKRKKEQQNIY LTEEIYSKLQYTDRELDAVLNKDEIFYLLKDIKLEYKEAFFLKYYYDFTYEEIALILDIRVNSVKQKLHRARKTIHSTVG GKP >Mature_162_residues GKENILTSYLINLGEKVFKLLLAKGAIKEDAEDIIQNTFYKVYTLLDDLTENNIRPWFFRVALNEYIDLKRKKEQQNIYL TEEIYSKLQYTDRELDAVLNKDEIFYLLKDIKLEYKEAFFLKYYYDFTYEEIALILDIRVNSVKQKLHRARKTIHSTVGG KP
Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing
COG id: COG1595
COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: <10 [C]
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19495; Mature: 19364
Theoretical pI: Translated: 7.62; Mature: 7.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 0.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGKENILTSYLINLGEKVFKLLLAKGAIKEDAEDIIQNTFYKVYTLLDDLTENNIRPWFF CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH RVALNEYIDLKRKKEQQNIYLTEEIYSKLQYTDRELDAVLNKDEIFYLLKDIKLEYKEAF HHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHH FLKYYYDFTYEEIALILDIRVNSVKQKLHRARKTIHSTVGGKP HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure GKENILTSYLINLGEKVFKLLLAKGAIKEDAEDIIQNTFYKVYTLLDDLTENNIRPWFF CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH RVALNEYIDLKRKKEQQNIYLTEEIYSKLQYTDRELDAVLNKDEIFYLLKDIKLEYKEAF HHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHH FLKYYYDFTYEEIALILDIRVNSVKQKLHRARKTIHSTVGGKP HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA