Definition | Bacillus anthracis str. Sterne chromosome, complete genome. |
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Accession | NC_005945 |
Length | 5,228,663 |
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The map label for this gene is sigH [H]
Identifier: 49183127
GI number: 49183127
Start: 102991
End: 103647
Strand: Direct
Name: sigH [H]
Synonym: BAS0093
Alternate gene names: 49183127
Gene position: 102991-103647 (Clockwise)
Preceding gene: 49183126
Following gene: 49183128
Centisome position: 1.97
GC content: 35.92
Gene sequence:
>657_bases GTGGAAGCAGGCTTCGTAAGTGTAGGCGACGTTACATTTCGTGATTTAGAAGATGAGGCAATCGTTGAGTTAGTTCGAAA AGGTAATACTGACGCTCTAGAATATTTGATTCACAAATATAAGAACTTTGTTCGCGCGAAATCGAGATCTTATTTCTTAG TGGGTGCCGATCGAGAAGATATTGTTCAAGAAGGTATGATTGGATTGTTTAAAGCGATTCGTGATTATAAAGAGGACAAG CTGTCTTCATTCAAAGCATTTGCTGAACTGTGTATCACTCGACAAATTATTACCGCTATTAAAACAGCAACCAGGCAAAA GCATATTCCGTTAAATTCGTATGTGTCTTTAGATAAACCGATTTATGACGAGGAATCTGATCGGACATTATTAGATGTTA TTTCGGAAGCGAAGGTAACTGATCCTGAAGAAATGATTATAAGTCAGGAAGAATATACCGACATAGAATCTAAAATATCT GAATTATTAAGCGATTTAGAAAGGAAAGTGCTTTCTTTATATCTAGACGGTCGTTCTTATCAAGAGATTTCGGAACAGTT AAATAGACATGTAAAATCTATTGATAACGCTTTACAGAGAGTGAAGCGGAAATTGGAACGATATATGGAAATGAGAGAGA GTACCACTTCAAATTAA
Upstream 100 bases:
>100_bases AAGTTAGAAAAATTAAGAAGAGGAGAGCGTTGAAGCATTGACGCTCTTTGTCTTTTTACTGTATAATATTTCTAAATAAA TAGCGGTCGGAGGGATCAAG
Downstream 100 bases:
>100_bases TAACAAGAGCTACAGGTGTAAAAAATCACCTGTTTTCTTTTTGTAGAGAGTACAAAAGGCATGTCATTGACATTGTCTTT TATTGTATGATACATTTTTA
Product: RNA polymerase factor sigma-70
Products: NA
Alternate protein names: Sigma-30 [H]
Number of amino acids: Translated: 218; Mature: 218
Protein sequence:
>218_residues MEAGFVSVGDVTFRDLEDEAIVELVRKGNTDALEYLIHKYKNFVRAKSRSYFLVGADREDIVQEGMIGLFKAIRDYKEDK LSSFKAFAELCITRQIITAIKTATRQKHIPLNSYVSLDKPIYDEESDRTLLDVISEAKVTDPEEMIISQEEYTDIESKIS ELLSDLERKVLSLYLDGRSYQEISEQLNRHVKSIDNALQRVKRKLERYMEMRESTTSN
Sequences:
>Translated_218_residues MEAGFVSVGDVTFRDLEDEAIVELVRKGNTDALEYLIHKYKNFVRAKSRSYFLVGADREDIVQEGMIGLFKAIRDYKEDK LSSFKAFAELCITRQIITAIKTATRQKHIPLNSYVSLDKPIYDEESDRTLLDVISEAKVTDPEEMIISQEEYTDIESKIS ELLSDLERKVLSLYLDGRSYQEISEQLNRHVKSIDNALQRVKRKLERYMEMRESTTSN >Mature_218_residues MEAGFVSVGDVTFRDLEDEAIVELVRKGNTDALEYLIHKYKNFVRAKSRSYFLVGADREDIVQEGMIGLFKAIRDYKEDK LSSFKAFAELCITRQIITAIKTATRQKHIPLNSYVSLDKPIYDEESDRTLLDVISEAKVTDPEEMIISQEEYTDIESKIS ELLSDLERKVLSLYLDGRSYQEISEQLNRHVKSIDNALQRVKRKLERYMEMRESTTSN
Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in the transition to post-exponential phase in the beginning of sporulation [H]
COG id: COG1595
COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sigma-70 factor family [H]
Homologues:
None
Paralogues:
None
Copy number: <10 [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014284 - InterPro: IPR014218 - InterPro: IPR016371 - InterPro: IPR000943 - InterPro: IPR007627 - InterPro: IPR013249 - InterPro: IPR013325 - InterPro: IPR013324 - InterPro: IPR000792 - InterPro: IPR011991 [H]
Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]
EC number: NA
Molecular weight: Translated: 25277; Mature: 25277
Theoretical pI: Translated: 4.88; Mature: 4.88
Prosite motif: PS00622 HTH_LUXR_1 ; PS00715 SIGMA70_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEAGFVSVGDVTFRDLEDEAIVELVRKGNTDALEYLIHKYKNFVRAKSRSYFLVGADRED CCCCCEEECCCHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHH IVQEGMIGLFKAIRDYKEDKLSSFKAFAELCITRQIITAIKTATRQKHIPLNSYVSLDKP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCC IYDEESDRTLLDVISEAKVTDPEEMIISQEEYTDIESKISELLSDLERKVLSLYLDGRSY CCCCCCCHHHHHHHHHCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH QEISEQLNRHVKSIDNALQRVKRKLERYMEMRESTTSN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MEAGFVSVGDVTFRDLEDEAIVELVRKGNTDALEYLIHKYKNFVRAKSRSYFLVGADRED CCCCCEEECCCHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHH IVQEGMIGLFKAIRDYKEDKLSSFKAFAELCITRQIITAIKTATRQKHIPLNSYVSLDKP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCC IYDEESDRTLLDVISEAKVTDPEEMIISQEEYTDIESKISELLSDLERKVLSLYLDGRSY CCCCCCCHHHHHHHHHCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH QEISEQLNRHVKSIDNALQRVKRKLERYMEMRESTTSN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3277943; 6322121 [H]