Definition | Bacillus anthracis str. Sterne chromosome, complete genome. |
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Accession | NC_005945 |
Length | 5,228,663 |
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The map label for this gene is yabR [H]
Identifier: 49183095
GI number: 49183095
Start: 63783
End: 64265
Strand: Direct
Name: yabR [H]
Synonym: BAS0060
Alternate gene names: 49183095
Gene position: 63783-64265 (Clockwise)
Preceding gene: 49183094
Following gene: 49183096
Centisome position: 1.22
GC content: 42.44
Gene sequence:
>483_bases ATGTCAATCGAGGTAGGCAGCAAGTTACAGGGTAAAGTAACAGGTATTACAAATTTTGGGGCTTTTGTGGAGCTGCCAGA AGGCTTAACGGGTCTTGTTCATATTAGTGAAGTTGCTGATAATTATGTGAAAGATATTAACGATCACTTAAAAGTGGGCG ACCAAGTAGAAGTAAAAGTTATTAACGTTGAAAAAGATGGTAAGATCGGTCTATCTATTAAAAAAGCGAAAGAACGTGAA AAAACAGAAGGAGATCGTCCACGTGGTGAATACCAACGCGGTGGTGATCAACAACGTTCTGGACGTCCACAACGTAATCG TTCTTTCAACAGAGATAACCGCGGTGGCGGTAACGACCGCGCTCCAAAAGAAACATTCGAGCAAAAAATGGCACGTTTCT TAAAGGATAGCGAAGATCGTTTAACTTCTTTAAAGCGTAACACTGAATCTAAACGTGGTGGCCGTGGCGCACGTCGCGGA TAA
Upstream 100 bases:
>100_bases TGTTTCTAAGTAGAGTATGTCTTATTGACACTATATTTTAGGATTATATATAATAAAGTAAAATTTGACTTTTTAACCAC TAAGGAGGAGCATTTTTTTT
Downstream 100 bases:
>100_bases TAAGAACGTTTAATTCTTAGAATATAGAGAGGTGCCCAGGGCGATTGCTCGGGGTGCTTTTTTATATGTAAAAATATATT TTTAAAAAAGTTTTCAAGAT
Product: hypothetical protein
Products: RNAn; a nucleoside diphosphate [C]
Alternate protein names: NA
Number of amino acids: Translated: 160; Mature: 159
Protein sequence:
>160_residues MSIEVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKVINVEKDGKIGLSIKKAKERE KTEGDRPRGEYQRGGDQQRSGRPQRNRSFNRDNRGGGNDRAPKETFEQKMARFLKDSEDRLTSLKRNTESKRGGRGARRG
Sequences:
>Translated_160_residues MSIEVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKVINVEKDGKIGLSIKKAKERE KTEGDRPRGEYQRGGDQQRSGRPQRNRSFNRDNRGGGNDRAPKETFEQKMARFLKDSEDRLTSLKRNTESKRGGRGARRG >Mature_159_residues SIEVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKVINVEKDGKIGLSIKKAKEREK TEGDRPRGEYQRGGDQQRSGRPQRNRSFNRDNRGGGNDRAPKETFEQKMARFLKDSEDRLTSLKRNTESKRGGRGARRG
Specific function: Involved In Mrna Degradation. Hydrolyzes Single-Stranded Polyribonucleotides Processively In The 3' To 5' Direction. Involved In The RNA Degradosome, A Multi-Enzyme Complex Important In RNA Processing And Messenger RNA Degradation. [C]
COG id: COG1098
COG function: function code J; Predicted RNA binding protein (contains ribosomal protein S1 domain)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 S1 motif domain [H]
Homologues:
Organism=Escherichia coli, GI145693187, Length=79, Percent_Identity=50.6329113924051, Blast_Score=77, Evalue=5e-16, Organism=Escherichia coli, GI87082262, Length=106, Percent_Identity=37.7358490566038, Blast_Score=62, Evalue=2e-11,
Paralogues:
None
Copy number: 200 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1000 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 3328 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 3,000 Molecules/Cell In: Glucose minimal media
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR003029 - InterPro: IPR022967 [H]
Pfam domain/function: PF00575 S1 [H]
EC number: 2.7.7.8 [C]
Molecular weight: Translated: 17882; Mature: 17751
Theoretical pI: Translated: 10.61; Mature: 10.61
Prosite motif: PS50126 S1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIEVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKV CCCCCCCCCCCEECCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE INVEKDGKIGLSIKKAKEREKTEGDRPRGEYQRGGDQQRSGRPQRNRSFNRDNRGGGNDR EEECCCCCCCEEEHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC APKETFEQKMARFLKDSEDRLTSLKRNTESKRGGRGARRG CCHHHHHHHHHHHHCCCHHHHHHHHHHCCHHCCCCCCCCC >Mature Secondary Structure SIEVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKV CCCCCCCCCCEECCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE INVEKDGKIGLSIKKAKEREKTEGDRPRGEYQRGGDQQRSGRPQRNRSFNRDNRGGGNDR EEECCCCCCCEEEHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC APKETFEQKMARFLKDSEDRLTSLKRNTESKRGGRGARRG CCHHHHHHHHHHHHCCCHHHHHHHHHHCCHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): 4500 [C]
Specific activity: NA
Km value (mM): NA
Substrates: RNAn+1; phosphate [C]
Specific reaction: RNAn+1 + phosphate = RNAn + a nucleoside diphosphate [C]
General reaction: Nucleotidyl group transfer [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8113187; 7584024; 9384377 [H]