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The map label for this gene is yabO [H]

Identifier: 49183091

GI number: 49183091

Start: 62047

End: 62322

Strand: Direct

Name: yabO [H]

Synonym: BAS0056

Alternate gene names: 49183091

Gene position: 62047-62322 (Clockwise)

Preceding gene: 49183090

Following gene: 49183092

Centisome position: 1.19

GC content: 32.61

Gene sequence:

>276_bases
ATGCGTCTAGATAAGTTTTTAAAAGTATCACGTTTAATTAAAAGAAGAACATTGGCAAAAGAAGTAGCTGATCAAGGAAG
AATATCCATTAATGGTCAAGTGGCAAAAGCGAGTTCGGATGTGAAAGTAGCTGATGAACTAACAATTCGTTTTGGTCAAA
AAATAGTAACTGTAAAAATAAACGAATTGAAAGAAACGACTAAAAAAGAAGATGCAGCAAATATGTATAGCTTAGTTCGT
GAAGAAAAAGTAAAGGCTGAAGAAGGCTTGTTCTAA

Upstream 100 bases:

>100_bases
TAGCTGAAATGAATAAAGAGATGCAAGATTTATCATTAGAGCAGTTAGATGTTTTATGGGAAGAGGCAAAACAGACAGAG
CGTTAATAGGGGGATTTAAT

Downstream 100 bases:

>100_bases
AATCGATTATCCTTTCATACATTACTATTAGCTAGTATAAATGTATGGGGGGATTTACGTGAATAATGGTTACTCACCTA
TGTCTTCTAATCAACAAAAT

Product: S4 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 91; Mature: 91

Protein sequence:

>91_residues
MRLDKFLKVSRLIKRRTLAKEVADQGRISINGQVAKASSDVKVADELTIRFGQKIVTVKINELKETTKKEDAANMYSLVR
EEKVKAEEGLF

Sequences:

>Translated_91_residues
MRLDKFLKVSRLIKRRTLAKEVADQGRISINGQVAKASSDVKVADELTIRFGQKIVTVKINELKETTKKEDAANMYSLVR
EEKVKAEEGLF
>Mature_91_residues
MRLDKFLKVSRLIKRRTLAKEVADQGRISINGQVAKASSDVKVADELTIRFGQKIVTVKINELKETTKKEDAANMYSLVR
EEKVKAEEGLF

Specific function: Involved In The Recycling Of Free 50s Ribosomal Subunits That Still Carry A Nascent Chain. Binds RNA More Specifically Than DNA. Binds With Very High Affinity To The Free 50s Ribosomal Subunit. Does Not Bind It When It Is Part Of The 70s Ribosome. [C]

COG id: COG1188

COG function: function code J; Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 10323; Mature: 10323

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLDKFLKVSRLIKRRTLAKEVADQGRISINGQVAKASSDVKVADELTIRFGQKIVTVKI
CCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCEEECCCCCCHHHHHHHHHCCCEEEEEEH
NELKETTKKEDAANMYSLVREEKVKAEEGLF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRLDKFLKVSRLIKRRTLAKEVADQGRISINGQVAKASSDVKVADELTIRFGQKIVTVKI
CCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCEEECCCCCCHHHHHHHHHCCCEEEEEEH
NELKETTKKEDAANMYSLVREEKVKAEEGLF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]