Definition | Bacillus anthracis str. Sterne chromosome, complete genome. |
---|---|
Accession | NC_005945 |
Length | 5,228,663 |
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The map label for this gene is yabJ [H]
Identifier: 49183081
GI number: 49183081
Start: 49997
End: 50371
Strand: Direct
Name: yabJ [H]
Synonym: BAS0046
Alternate gene names: 49183081
Gene position: 49997-50371 (Clockwise)
Preceding gene: 49183080
Following gene: 161611187
Centisome position: 0.96
GC content: 35.47
Gene sequence:
>375_bases ATGAAAGTTGTTCAAACAAACAATGCACCACAAGCAATTGGACCATATTCACAAGGGATTATTGTAAATAATATGTTTTA CAGTTCAGGACAAATTCCGTTAACTGCGAGTGGAGAGCTTGTAGCAGGAGACGTAACAGTACAAACAGAGCAAGTATTTC AAAATTTACAAGCAGTATTAGAAGAAGCAGGTGCTTCATTTGATACGGTAGTCAAAACAACAGTATTCTTAAAAGACATG GATGATTTTAATGCTGTTAATGAAGTATATGGATCTTATTTCTCTGCTCATAAGCCAGCTCGTTCTTGTGTACAAGTAGC AAAATTACCGAAAGATGTTTCTGTTGAAATCGAAGTAATTGCCCTAGTGAAGTAA
Upstream 100 bases:
>100_bases TCTTTTTTTATTCTATTTATAAATTATAAAATAGATGGACAAACTGCTTTTCGTGCACTATTTTTAAAGAGTAAAAATAA ATAATAAAAGGGTGAAAAGT
Downstream 100 bases:
>100_bases TTCTTTGTAAGCGATAACCTCTACTAATCTCTATATTCAATTACATTAAAAATTTTTATCTTAAAAATTTTTAAAAAATT AAAGGGAAAATAGAAATTTT
Product: endoribonuclease L-PSP
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 124; Mature: 124
Protein sequence:
>124_residues MKVVQTNNAPQAIGPYSQGIIVNNMFYSSGQIPLTASGELVAGDVTVQTEQVFQNLQAVLEEAGASFDTVVKTTVFLKDM DDFNAVNEVYGSYFSAHKPARSCVQVAKLPKDVSVEIEVIALVK
Sequences:
>Translated_124_residues MKVVQTNNAPQAIGPYSQGIIVNNMFYSSGQIPLTASGELVAGDVTVQTEQVFQNLQAVLEEAGASFDTVVKTTVFLKDM DDFNAVNEVYGSYFSAHKPARSCVQVAKLPKDVSVEIEVIALVK >Mature_124_residues MKVVQTNNAPQAIGPYSQGIIVNNMFYSSGQIPLTASGELVAGDVTVQTEQVFQNLQAVLEEAGASFDTVVKTTVFLKDM DDFNAVNEVYGSYFSAHKPARSCVQVAKLPKDVSVEIEVIALVK
Specific function: Unknown
COG id: COG0251
COG function: function code J; Putative translation initiation inhibitor, yjgF family
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the RutC family [H]
Homologues:
Organism=Homo sapiens, GI5032215, Length=122, Percent_Identity=48.3606557377049, Blast_Score=123, Evalue=3e-29, Organism=Escherichia coli, GI87082396, Length=126, Percent_Identity=49.2063492063492, Blast_Score=129, Evalue=4e-32, Organism=Escherichia coli, GI87082213, Length=124, Percent_Identity=45.1612903225806, Blast_Score=120, Evalue=4e-29, Organism=Escherichia coli, GI1787245, Length=112, Percent_Identity=31.25, Blast_Score=73, Evalue=7e-15, Organism=Caenorhabditis elegans, GI25148896, Length=122, Percent_Identity=50, Blast_Score=112, Evalue=3e-26, Organism=Caenorhabditis elegans, GI71982068, Length=122, Percent_Identity=50, Blast_Score=112, Evalue=3e-26, Organism=Caenorhabditis elegans, GI71982075, Length=122, Percent_Identity=50, Blast_Score=112, Evalue=4e-26, Organism=Saccharomyces cerevisiae, GI6322138, Length=121, Percent_Identity=49.5867768595041, Blast_Score=122, Evalue=2e-29, Organism=Saccharomyces cerevisiae, GI6320899, Length=100, Percent_Identity=51, Blast_Score=108, Evalue=2e-25, Organism=Drosophila melanogaster, GI19921376, Length=122, Percent_Identity=48.3606557377049, Blast_Score=115, Evalue=7e-27,
Paralogues:
None
Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013813 - InterPro: IPR006175 - InterPro: IPR006056 - InterPro: IPR019897 [H]
Pfam domain/function: PF01042 Ribonuc_L-PSP [H]
EC number: NA
Molecular weight: Translated: 13371; Mature: 13371
Theoretical pI: Translated: 4.39; Mature: 4.39
Prosite motif: PS01094 UPF0076
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVVQTNNAPQAIGPYSQGIIVNNMFYSSGQIPLTASGELVAGDVTVQTEQVFQNLQAVL CCEEECCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCEEECCEEECHHHHHHHHHHHH EEAGASFDTVVKTTVFLKDMDDFNAVNEVYGSYFSAHKPARSCVQVAKLPKDVSVEIEVI HHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEEE ALVK EEEC >Mature Secondary Structure MKVVQTNNAPQAIGPYSQGIIVNNMFYSSGQIPLTASGELVAGDVTVQTEQVFQNLQAVL CCEEECCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCEEECCEEECHHHHHHHHHHHH EEAGASFDTVVKTTVFLKDMDDFNAVNEVYGSYFSAHKPARSCVQVAKLPKDVSVEIEVI HHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEEE ALVK EEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7584024; 9384377; 10368157; 14594850; 10557275 [H]