Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
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Accession | NC_005861 |
Length | 2,414,465 |
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The map label for this gene is 46447529
Identifier: 46447529
GI number: 46447529
Start: 2256493
End: 2256897
Strand: Reverse
Name: 46447529
Synonym: pc1895
Alternate gene names: NA
Gene position: 2256897-2256493 (Counterclockwise)
Preceding gene: 46447530
Following gene: 46447528
Centisome position: 93.47
GC content: 33.83
Gene sequence:
>405_bases ATGAAAGTTGTAAAAAGTAAAAAGCATTTTGTTACACTTGTAGAAATGATGATCGTCATGTTCTTAATCGCAATGATTAC AGGCGTGATAGCTTATAACTATACAGGTAGTTTAGATGAAGGAAAGGCCTTTAAAACAAAAGCGGGAATTGAAAAAATTC ATACCGTTTTAGATTTACATTTTGCCATGCATCCGGAAGAAAAAGAAAATGTAGCAATGAATTGGAAAAAGATTTTAAGC GATTCACCGCTCGTTAAAAATTCTCGTGATCTCGAAAAAGATGGGTGGGGGGTAGAATATACTGTCACGACTAAAGAAAA TGGAGAGATTGAAATCACTTCTGCGAAATATACAGATTATCTGAATAAAAAAGGGCAGGGCAGTTTATTCAAGGATTCAA AATAA
Upstream 100 bases:
>100_bases TGTGATGGGACTCGTTATTGGCACAGTGCTTTTGGCTATTATGTTGCCATTAACAGATGTCAGCTCTTTTTCAGCAGGTT GAAAAAATAAAGAGGATGTT
Downstream 100 bases:
>100_bases TTGAACGAGTGGTCTGTGAAAAATGCCTTGCATAAGGCTCATTTTACGTTATTAGAAGTATTAGTCGTCCTTTTAATCCT ATCGATGGGCGCTACTTTAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 134; Mature: 134
Protein sequence:
>134_residues MKVVKSKKHFVTLVEMMIVMFLIAMITGVIAYNYTGSLDEGKAFKTKAGIEKIHTVLDLHFAMHPEEKENVAMNWKKILS DSPLVKNSRDLEKDGWGVEYTVTTKENGEIEITSAKYTDYLNKKGQGSLFKDSK
Sequences:
>Translated_134_residues MKVVKSKKHFVTLVEMMIVMFLIAMITGVIAYNYTGSLDEGKAFKTKAGIEKIHTVLDLHFAMHPEEKENVAMNWKKILS DSPLVKNSRDLEKDGWGVEYTVTTKENGEIEITSAKYTDYLNKKGQGSLFKDSK >Mature_134_residues MKVVKSKKHFVTLVEMMIVMFLIAMITGVIAYNYTGSLDEGKAFKTKAGIEKIHTVLDLHFAMHPEEKENVAMNWKKILS DSPLVKNSRDLEKDGWGVEYTVTTKENGEIEITSAKYTDYLNKKGQGSLFKDSK
Specific function: Unknown
COG id: COG2165
COG function: function code NU; Type II secretory pathway, pseudopilin PulG
Gene ontology:
Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012902 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15193; Mature: 15193
Theoretical pI: Translated: 9.27; Mature: 9.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 5.2 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 5.2 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVVKSKKHFVTLVEMMIVMFLIAMITGVIAYNYTGSLDEGKAFKTKAGIEKIHTVLDLH CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH FAMHPEEKENVAMNWKKILSDSPLVKNSRDLEKDGWGVEYTVTTKENGEIEITSAKYTDY HHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCHHHHH LNKKGQGSLFKDSK HCCCCCCCCCCCCC >Mature Secondary Structure MKVVKSKKHFVTLVEMMIVMFLIAMITGVIAYNYTGSLDEGKAFKTKAGIEKIHTVLDLH CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH FAMHPEEKENVAMNWKKILSDSPLVKNSRDLEKDGWGVEYTVTTKENGEIEITSAKYTDY HHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCHHHHH LNKKGQGSLFKDSK HCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9784136 [H]