Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
---|---|
Accession | NC_005861 |
Length | 2,414,465 |
Click here to switch to the map view.
The map label for this gene is 46447495
Identifier: 46447495
GI number: 46447495
Start: 2221636
End: 2222838
Strand: Reverse
Name: 46447495
Synonym: pc1861
Alternate gene names: NA
Gene position: 2222838-2221636 (Counterclockwise)
Preceding gene: 46447501
Following gene: 46447489
Centisome position: 92.06
GC content: 37.74
Gene sequence:
>1203_bases ATGGTTTTTTCTGCGAAACAATCTATTCCATTATCGTTAGCTCCGTTACTGGCTTTGACATGGTTAGCACATTTTTTTAT TGATACAATGCTAGGAATTTGGCCTGTCTATAAGTCGATGGCTCAATTAGATTTCGCCAAAGCTGGCCTTGTCGTTGCAG CAGGAGCATTTATTGGGGAAGGAGCTCAATTATTTTTTGGAGCATTTAGTGACAGAGGTTATCGAAAGCATTTAATGATT TTAGGATTGCTATTAGTGGTTGCTAGTACACTTGTAGTCCAATTTAGCCATTATGGGATTTTATTTTGTCTTTACTTATT TACCTGTTTAGGTTCAGGTAGCTTTCATCCTGCTGCAGGCAGTTTAATGGGAAGTTTGATTCCAACGAGGCGAGGCTTAT TAATGGCTATTTTTGCTTCGGGAGGGAGTTTAGGACTTGCTTTTAGCCAACTGATTTTTTTATTTGTGTATAAAAATATG AATGGACAAACGTATTTACTAGCCATCCCCGCCATTATTTTGAGCTTTTTTTTGATTTTTTATCGTTTTCCCGTGATACA ATCTGTTCAGCATACTTTAAAGAAGGGTATTTTAAGAGATTTTAAGGCTTTTTTTTGTCATATTCCCTTGCGAATGCTTT ATTTAGCACAAGTGGCCAATCAATCCATTTTATGGGGGATGATTTTTATTTTACCAGATGCTTTAAAAACCCTAGGTTTA GCCGAATGGATTTATTATGGAGGAGGGCATCTATGCTTAATTTTGGGAGGAGCATGTATGATGGTGCCAGCTGGCTATTT AGCTGATAAATACTCTCCTCGGCAAGTCATCTTATACGCTGGGATAGTCAGTTGTGCGACTTTTTATTTTATCTTGTTTT TTGGAAGTTTTTCTATGTGGCTTTCTCTCCTATTACTTTTTATTTTAGGAGCTTCATTGACGCTTGTGAATCCGATTGGA ATTGCGCTTGGTGTACGCTATGCACCTGGGCAGGCAGGATCTATCAGTGCTTTTTTAATGGGGATGGTTTGGTGTATATC TGAAGCAATCGGTCCAGGATCAGTTGGGTTAATGACAGCTTTTTTTGAGAATTATGCACCTATCAAAGCGTTGGCTGTGC TTGGTTTACTATTCCTCATTCAAATTTATGCAACATTCTCTCTTCCCAAAGAAGAACAAGAATTAGTTTTTTCTCCTTGT TAA
Upstream 100 bases:
>100_bases TTTAAAAAAATTTATAATTATTTTATTATATTTATAATATTAATTTAATTTAACTAATAAAAATTGTTGTTATATTCGAT AAATTTTGAAAAAGGTTTGT
Downstream 100 bases:
>100_bases ACAAGGTTAAACAATCTTCATTTTTTAACAGCTATTTCAGAAATTTGGTTTAGCTCGATGTGAATGAGGAGTTCCCCATC GAGCTAAGATGGACTTAGAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 400; Mature: 400
Protein sequence:
>400_residues MVFSAKQSIPLSLAPLLALTWLAHFFIDTMLGIWPVYKSMAQLDFAKAGLVVAAGAFIGEGAQLFFGAFSDRGYRKHLMI LGLLLVVASTLVVQFSHYGILFCLYLFTCLGSGSFHPAAGSLMGSLIPTRRGLLMAIFASGGSLGLAFSQLIFLFVYKNM NGQTYLLAIPAIILSFFLIFYRFPVIQSVQHTLKKGILRDFKAFFCHIPLRMLYLAQVANQSILWGMIFILPDALKTLGL AEWIYYGGGHLCLILGGACMMVPAGYLADKYSPRQVILYAGIVSCATFYFILFFGSFSMWLSLLLLFILGASLTLVNPIG IALGVRYAPGQAGSISAFLMGMVWCISEAIGPGSVGLMTAFFENYAPIKALAVLGLLFLIQIYATFSLPKEEQELVFSPC
Sequences:
>Translated_400_residues MVFSAKQSIPLSLAPLLALTWLAHFFIDTMLGIWPVYKSMAQLDFAKAGLVVAAGAFIGEGAQLFFGAFSDRGYRKHLMI LGLLLVVASTLVVQFSHYGILFCLYLFTCLGSGSFHPAAGSLMGSLIPTRRGLLMAIFASGGSLGLAFSQLIFLFVYKNM NGQTYLLAIPAIILSFFLIFYRFPVIQSVQHTLKKGILRDFKAFFCHIPLRMLYLAQVANQSILWGMIFILPDALKTLGL AEWIYYGGGHLCLILGGACMMVPAGYLADKYSPRQVILYAGIVSCATFYFILFFGSFSMWLSLLLLFILGASLTLVNPIG IALGVRYAPGQAGSISAFLMGMVWCISEAIGPGSVGLMTAFFENYAPIKALAVLGLLFLIQIYATFSLPKEEQELVFSPC >Mature_400_residues MVFSAKQSIPLSLAPLLALTWLAHFFIDTMLGIWPVYKSMAQLDFAKAGLVVAAGAFIGEGAQLFFGAFSDRGYRKHLMI LGLLLVVASTLVVQFSHYGILFCLYLFTCLGSGSFHPAAGSLMGSLIPTRRGLLMAIFASGGSLGLAFSQLIFLFVYKNM NGQTYLLAIPAIILSFFLIFYRFPVIQSVQHTLKKGILRDFKAFFCHIPLRMLYLAQVANQSILWGMIFILPDALKTLGL AEWIYYGGGHLCLILGGACMMVPAGYLADKYSPRQVILYAGIVSCATFYFILFFGSFSMWLSLLLLFILGASLTLVNPIG IALGVRYAPGQAGSISAFLMGMVWCISEAIGPGSVGLMTAFFENYAPIKALAVLGLLFLIQIYATFSLPKEEQELVFSPC
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43677; Mature: 43677
Theoretical pI: Translated: 8.97; Mature: 8.97
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVFSAKQSIPLSLAPLLALTWLAHFFIDTMLGIWPVYKSMAQLDFAKAGLVVAAGAFIGE CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC GAQLFFGAFSDRGYRKHLMILGLLLVVASTLVVQFSHYGILFCLYLFTCLGSGSFHPAAG CHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH SLMGSLIPTRRGLLMAIFASGGSLGLAFSQLIFLFVYKNMNGQTYLLAIPAIILSFFLIF HHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHH YRFPVIQSVQHTLKKGILRDFKAFFCHIPLRMLYLAQVANQSILWGMIFILPDALKTLGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH AEWIYYGGGHLCLILGGACMMVPAGYLADKYSPRQVILYAGIVSCATFYFILFFGSFSMW HHHHHHCCCEEEEHCCCHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH LSLLLLFILGASLTLVNPIGIALGVRYAPGQAGSISAFLMGMVWCISEAIGPGSVGLMTA HHHHHHHHHCCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH FFENYAPIKALAVLGLLFLIQIYATFSLPKEEQELVFSPC HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCC >Mature Secondary Structure MVFSAKQSIPLSLAPLLALTWLAHFFIDTMLGIWPVYKSMAQLDFAKAGLVVAAGAFIGE CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC GAQLFFGAFSDRGYRKHLMILGLLLVVASTLVVQFSHYGILFCLYLFTCLGSGSFHPAAG CHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH SLMGSLIPTRRGLLMAIFASGGSLGLAFSQLIFLFVYKNMNGQTYLLAIPAIILSFFLIF HHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHH YRFPVIQSVQHTLKKGILRDFKAFFCHIPLRMLYLAQVANQSILWGMIFILPDALKTLGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH AEWIYYGGGHLCLILGGACMMVPAGYLADKYSPRQVILYAGIVSCATFYFILFFGSFSMW HHHHHHCCCEEEEHCCCHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH LSLLLLFILGASLTLVNPIGIALGVRYAPGQAGSISAFLMGMVWCISEAIGPGSVGLMTA HHHHHHHHHCCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH FFENYAPIKALAVLGLLFLIQIYATFSLPKEEQELVFSPC HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA