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The map label for this gene is rlmB [C]

Identifier: 46447426

GI number: 46447426

Start: 2146661

End: 2147458

Strand: Reverse

Name: rlmB [C]

Synonym: pc1792

Alternate gene names: 46447426

Gene position: 2147458-2146661 (Counterclockwise)

Preceding gene: 46447427

Following gene: 46447425

Centisome position: 88.94

GC content: 39.1

Gene sequence:

>798_bases
GTGCAAAATCCTAAGGTTAAGCAAATATTACATTTACGTGATCGACCCGAAAGAGATATTTCGCAAACTTTTTTAATTGA
GGGTTATAGAGAACTATTACGTGCTGCTGATGCGGATTGGGAAGTGAATTTACTATTCATTTGTCCCGCTCTTTTTTTGG
GAATGAATGAACCTACTTTAATTGAAAGATTGACATCACGTGGAACAGAACTTTTTTATTGTTCGGAAAAAGTTTTTCGC
AAAATTTCCTACAGAGACAGACCGGATGGGTTATTGGCAATCGCTCCTCAAAGACATTTAACTTTAGATGATTTGTCTTT
GAAGACTAAAAAACCAATGGCGCCCTTCTTTGTTGTCGCTGAAGCAATCGAAAAACCGGGGAATTTAGGCACAATTTTAC
GCTCTTCTGATGCTGTTGGGATTGATGGGTTGATTGTTTGCGATCGATGTACAGATATTTATAATCCTAATGTTGTTCGA
GCAAGTGTAGGTACTCTCTTTACAGTTCCTACAGTCGAAGCAAGAGGAGAAGATATTTTACTTTGGCTGAATAAGCAAGG
GATCGACATTTTAGCAGCGACACCTCATGCAGAAAAAGAATTTACACAAGTAGATTTGACAAGTCCAGTTGCAATTGCAG
TCGGTACTGAGCAATTAGGCTTATCTGAGCGATGGATGAAACAAGCTACTATGCAAGTGCGTATTCCTATGATGGGAGTG
GCAGACTCGTTAAATGTGGCAATGGCAACAACCCTTCTTCTTTATGAAGTCCTTAGACAGAGGCAGTTGAAAAAATAA

Upstream 100 bases:

>100_bases
ATCGAATTTGGAGAAATGTTATTAGAGGGACCTGATTCTTTGAAGCTTCCAAGCGGCACTTATGCGAAATGGGTGAGAGA
AAATGATTGAGCTGACGAGT

Downstream 100 bases:

>100_bases
GATGACAGCTTCTATTTCGATTGTGTACGAAGATAATCATTTGTTTGTTTTAAACAAACCGGCAGGATTATTGACCCAGC
CAAGTGGAACCGCACACGAT

Product: putative rRNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MQNPKVKQILHLRDRPERDISQTFLIEGYRELLRAADADWEVNLLFICPALFLGMNEPTLIERLTSRGTELFYCSEKVFR
KISYRDRPDGLLAIAPQRHLTLDDLSLKTKKPMAPFFVVAEAIEKPGNLGTILRSSDAVGIDGLIVCDRCTDIYNPNVVR
ASVGTLFTVPTVEARGEDILLWLNKQGIDILAATPHAEKEFTQVDLTSPVAIAVGTEQLGLSERWMKQATMQVRIPMMGV
ADSLNVAMATTLLLYEVLRQRQLKK

Sequences:

>Translated_265_residues
MQNPKVKQILHLRDRPERDISQTFLIEGYRELLRAADADWEVNLLFICPALFLGMNEPTLIERLTSRGTELFYCSEKVFR
KISYRDRPDGLLAIAPQRHLTLDDLSLKTKKPMAPFFVVAEAIEKPGNLGTILRSSDAVGIDGLIVCDRCTDIYNPNVVR
ASVGTLFTVPTVEARGEDILLWLNKQGIDILAATPHAEKEFTQVDLTSPVAIAVGTEQLGLSERWMKQATMQVRIPMMGV
ADSLNVAMATTLLLYEVLRQRQLKK
>Mature_265_residues
MQNPKVKQILHLRDRPERDISQTFLIEGYRELLRAADADWEVNLLFICPALFLGMNEPTLIERLTSRGTELFYCSEKVFR
KISYRDRPDGLLAIAPQRHLTLDDLSLKTKKPMAPFFVVAEAIEKPGNLGTILRSSDAVGIDGLIVCDRCTDIYNPNVVR
ASVGTLFTVPTVEARGEDILLWLNKQGIDILAATPHAEKEFTQVDLTSPVAIAVGTEQLGLSERWMKQATMQVRIPMMGV
ADSLNVAMATTLLLYEVLRQRQLKK

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Escherichia coli, GI1790623, Length=204, Percent_Identity=26.9607843137255, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1790083, Length=146, Percent_Identity=32.8767123287671, Blast_Score=76, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24666840, Length=283, Percent_Identity=24.7349823321555, Blast_Score=71, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 29780; Mature: 29780

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNPKVKQILHLRDRPERDISQTFLIEGYRELLRAADADWEVNLLFICPALFLGMNEPTL
CCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHCCCCCHH
IERLTSRGTELFYCSEKVFRKISYRDRPDGLLAIAPQRHLTLDDLSLKTKKPMAPFFVVA
HHHHHHCCCEEEEECHHHHHHHCCCCCCCCEEEECCCCCCEECCCCCCCCCCCCHHHHHH
EAIEKPGNLGTILRSSDAVGIDGLIVCDRCTDIYNPNVVRASVGTLFTVPTVEARGEDIL
HHHHCCCCCEEEEECCCCCCCCCEEEECCHHHCCCCCEEEEECCEEEEECCCCCCCCEEE
LWLNKQGIDILAATPHAEKEFTQVDLTSPVAIAVGTEQLGLSERWMKQATMQVRIPMMGV
EEECCCCCEEEEECCCCCCHHEEEECCCCEEEEECCHHHCCHHHHHHHHHHEEEECEECC
ADSLNVAMATTLLLYEVLRQRQLKK
CCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQNPKVKQILHLRDRPERDISQTFLIEGYRELLRAADADWEVNLLFICPALFLGMNEPTL
CCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHCCCCCHH
IERLTSRGTELFYCSEKVFRKISYRDRPDGLLAIAPQRHLTLDDLSLKTKKPMAPFFVVA
HHHHHHCCCEEEEECHHHHHHHCCCCCCCCEEEECCCCCCEECCCCCCCCCCCCHHHHHH
EAIEKPGNLGTILRSSDAVGIDGLIVCDRCTDIYNPNVVRASVGTLFTVPTVEARGEDIL
HHHHCCCCCEEEEECCCCCCCCCEEEECCHHHCCCCCEEEEECCEEEEECCCCCCCCEEE
LWLNKQGIDILAATPHAEKEFTQVDLTSPVAIAVGTEQLGLSERWMKQATMQVRIPMMGV
EEECCCCCEEEEECCCCCCHHEEEECCCCEEEEECCHHHCCHHHHHHHHHHEEEECEECC
ADSLNVAMATTLLLYEVLRQRQLKK
CCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]