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The map label for this gene is sodC [H]

Identifier: 46447393

GI number: 46447393

Start: 2102482

End: 2103099

Strand: Reverse

Name: sodC [H]

Synonym: pc1759

Alternate gene names: 46447393

Gene position: 2103099-2102482 (Counterclockwise)

Preceding gene: 46447394

Following gene: 46447391

Centisome position: 87.1

GC content: 36.25

Gene sequence:

>618_bases
ATGTCTAAACAATCATTTCATCATGCTTTACGATTTTCAAAGTTTTTTGCAGCAGCTTTACTTGTCATAACAGCCGCAAG
TTGCGCATGTAAAGATTCTCATGCTCATACACGACAAAATAACAATAAGAATAACGAAGTGGCAGATGCTGGTGTAATTC
AGATTCGTCAAATTAAAAAAGCTAAAGCTGTTGTACATGGAGTTAATGATAACAAAGTCAGAGGAACAGTGACATTTACA
AAAGTTATTGGAGGAGTCAAAATTATTGCAGATGTAATGGGATTAACGCCAGGTAAACATGGTTTTCACATCCATGAATT
TGGCGATTGTGGAAAAAATGGTGAAGCAGCTGGTGCTCATTTTAATCCCATGAATCAAAAACATGGCGGTCCTGATAGTT
TGGAAAGGCATGTGGGAGATTTTGGTAATTTAGAAGCTGATAGCCATGGACATGCTCATTATGAAAGAGTAGATAAGTTT
ATCGAACTAGATGGTAAAAATTCAATTATTGGTCGCTCGATTATGATTCATGCTGATGAAGATGATTTTAAAACTCAACC
AAGTGGTGCTTCTGGAGCTAGAATTGGTTGCGGAACAATTGAAATCGAAAATGAATAA

Upstream 100 bases:

>100_bases
GAAGAATCAAATGTTTATTTAAAGTTGGTTTTGCTTAAGGGATAAACTTCAATACTTATCCATACATGTATTAAAAAGTT
TTTACCAAGGAAAGGTGTAT

Downstream 100 bases:

>100_bases
CCATTAAGGCTGATTTAAAAAAGTGGGTTATTCGTATTTATATCACCCACTTTTTTAAATCAGTCAGTTACTGTAAATCA
CCTAACAAAGTTTGATGGCT

Product: putative superoxide dismutase (Cu-Zn)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MSKQSFHHALRFSKFFAAALLVITAASCACKDSHAHTRQNNNKNNEVADAGVIQIRQIKKAKAVVHGVNDNKVRGTVTFT
KVIGGVKIIADVMGLTPGKHGFHIHEFGDCGKNGEAAGAHFNPMNQKHGGPDSLERHVGDFGNLEADSHGHAHYERVDKF
IELDGKNSIIGRSIMIHADEDDFKTQPSGASGARIGCGTIEIENE

Sequences:

>Translated_205_residues
MSKQSFHHALRFSKFFAAALLVITAASCACKDSHAHTRQNNNKNNEVADAGVIQIRQIKKAKAVVHGVNDNKVRGTVTFT
KVIGGVKIIADVMGLTPGKHGFHIHEFGDCGKNGEAAGAHFNPMNQKHGGPDSLERHVGDFGNLEADSHGHAHYERVDKF
IELDGKNSIIGRSIMIHADEDDFKTQPSGASGARIGCGTIEIENE
>Mature_204_residues
SKQSFHHALRFSKFFAAALLVITAASCACKDSHAHTRQNNNKNNEVADAGVIQIRQIKKAKAVVHGVNDNKVRGTVTFTK
VIGGVKIIADVMGLTPGKHGFHIHEFGDCGKNGEAAGAHFNPMNQKHGGPDSLERHVGDFGNLEADSHGHAHYERVDKFI
ELDGKNSIIGRSIMIHADEDDFKTQPSGASGARIGCGTIEIENE

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI4507149, Length=151, Percent_Identity=43.046357615894, Blast_Score=115, Evalue=2e-26,
Organism=Homo sapiens, GI4826665, Length=154, Percent_Identity=35.7142857142857, Blast_Score=95, Evalue=5e-20,
Organism=Escherichia coli, GI1787934, Length=140, Percent_Identity=35.7142857142857, Blast_Score=70, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17537871, Length=169, Percent_Identity=39.6449704142012, Blast_Score=115, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI71981876, Length=181, Percent_Identity=37.5690607734807, Blast_Score=114, Evalue=4e-26,
Organism=Caenorhabditis elegans, GI71981879, Length=159, Percent_Identity=39.622641509434, Blast_Score=112, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17554806, Length=154, Percent_Identity=38.3116883116883, Blast_Score=110, Evalue=5e-25,
Organism=Saccharomyces cerevisiae, GI6322564, Length=154, Percent_Identity=38.3116883116883, Blast_Score=97, Evalue=2e-21,
Organism=Drosophila melanogaster, GI85725006, Length=198, Percent_Identity=38.8888888888889, Blast_Score=115, Evalue=2e-26,
Organism=Drosophila melanogaster, GI116007680, Length=193, Percent_Identity=39.3782383419689, Blast_Score=115, Evalue=2e-26,
Organism=Drosophila melanogaster, GI45551081, Length=191, Percent_Identity=39.7905759162304, Blast_Score=114, Evalue=4e-26,
Organism=Drosophila melanogaster, GI24652737, Length=191, Percent_Identity=39.7905759162304, Blast_Score=114, Evalue=4e-26,
Organism=Drosophila melanogaster, GI17136496, Length=154, Percent_Identity=41.5584415584416, Blast_Score=109, Evalue=1e-24,
Organism=Drosophila melanogaster, GI281363087, Length=145, Percent_Identity=37.9310344827586, Blast_Score=91, Evalue=8e-19,
Organism=Drosophila melanogaster, GI24652342, Length=145, Percent_Identity=37.9310344827586, Blast_Score=91, Evalue=8e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22115; Mature: 21984

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00087 SOD_CU_ZN_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKQSFHHALRFSKFFAAALLVITAASCACKDSHAHTRQNNNKNNEVADAGVIQIRQIKK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHH
AKAVVHGVNDNKVRGTVTFTKVIGGVKIIADVMGLTPGKHGFHIHEFGDCGKNGEAAGAH
HHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCC
FNPMNQKHGGPDSLERHVGDFGNLEADSHGHAHYERVDKFIELDGKNSIIGRSIMIHADE
CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCEEEEEECC
DDFKTQPSGASGARIGCGTIEIENE
CCCCCCCCCCCCCEEECEEEEECCC
>Mature Secondary Structure 
SKQSFHHALRFSKFFAAALLVITAASCACKDSHAHTRQNNNKNNEVADAGVIQIRQIKK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHH
AKAVVHGVNDNKVRGTVTFTKVIGGVKIIADVMGLTPGKHGFHIHEFGDCGKNGEAAGAH
HHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCC
FNPMNQKHGGPDSLERHVGDFGNLEADSHGHAHYERVDKFIELDGKNSIIGRSIMIHADE
CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCEEEEEECC
DDFKTQPSGASGARIGCGTIEIENE
CCCCCCCCCCCCCEEECEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10567266 [H]