Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
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Accession | NC_005861 |
Length | 2,414,465 |
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The map label for this gene is 46447371
Identifier: 46447371
GI number: 46447371
Start: 2076864
End: 2077892
Strand: Reverse
Name: 46447371
Synonym: pc1737
Alternate gene names: NA
Gene position: 2077892-2076864 (Counterclockwise)
Preceding gene: 46447372
Following gene: 46447370
Centisome position: 86.06
GC content: 37.8
Gene sequence:
>1029_bases ATGTCGACATTATTGTTACAAAATCTGTTAGAAAATGGAACAGAATTTTATTTTTTTATCTTTGTACTTGCTATTGTCTT GCTGATTATTTTAAGTGTAATTGGTAAATTTATCAGTTTATGGTTTCAAGCCTTTGTATCTGGGACACCCATTCCTCTTT TTAATATCATCGGAATGAGTTTGCGTAAAATTCCTCCAAGGGAAATCGTCAATGCCAGAATCAACTTATACAAAGCTGGA TTAAAAGATATTCATGTTGGAGATTTAGAAACGCATTATTTGGCTGGTGGACATGTTCCTAATGTAGTCGAAGCTTTAAT CGCTGCTGATAAAGCTAATATTCCTCTCGATTGGAGACGTGCAACGGCAATTGATTTAGCGGGTCGCGATATTAAAGCTG CCGTCCAGACGTCAGTAAATCCACGCGTGATTGATTGTCCAAATCATGGAGGATATATTACGGGGGTTGCTAAAGACGGA ATTCAATTAAATTGCCGTGCCAGAGTAACAGTGAGGACAAATATCGCTCAATTAGTTGGGGGGGCGACGGAAGAGACGAT TATTGCTCGTGTGGGAGAAGGAATTGTGAGTGCAATTGGAGGATCTGATACGCATAAACAAGTTTTAGAATCTCCTCAAA AAATTTCAAAACTTGTGCTTGAAAAAGGGCTTGATTCCTCAACAGCATTTTTAATTCTCTCCATTGATATCGTAGAAATT AATTTAGGCGAAAATATTGGGGCGAAACTCAGAACGGATCAAGCTGAATCTGATATTCGAATTGCAAAAGCGGAAGCTGA AAAAAGACGGACGATGGCTGTTGCTCAAGAACAGGAAAATTTAGCGAAAGTCAGAGATATGGAAGCAAAACTTGTTGAAG CACAAGCAGCTGTTCCTTTAGCGATGGCAGAAGCATTTAGAAGTGGAAAATTAGGTATTATGGATTATCAACGTATTCAA AATATTCAGTCAGATACGGATATGCGTAATGCATTAGCAAAACCAGATTCAGATAAAAAGCAAAATTAA
Upstream 100 bases:
>100_bases TTTCCGGGCAAGAAGAAAGTTTAATTGTAAAAAACTTATTTCCCACTCAAACAATTTAAAAAAGATTAAGAAGAATAAAA TTTCATCGAAGGAATTAACT
Downstream 100 bases:
>100_bases GGTCTTTTTTTTATGTCTATTGTGGAGTTTATTGGATTTGCGATTAGCTTTTTTTCTCTCATCTTCTTATTTTTTCGCAA TCAAGCTTATTTTTTTCAAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 342; Mature: 341
Protein sequence:
>342_residues MSTLLLQNLLENGTEFYFFIFVLAIVLLIILSVIGKFISLWFQAFVSGTPIPLFNIIGMSLRKIPPREIVNARINLYKAG LKDIHVGDLETHYLAGGHVPNVVEALIAADKANIPLDWRRATAIDLAGRDIKAAVQTSVNPRVIDCPNHGGYITGVAKDG IQLNCRARVTVRTNIAQLVGGATEETIIARVGEGIVSAIGGSDTHKQVLESPQKISKLVLEKGLDSSTAFLILSIDIVEI NLGENIGAKLRTDQAESDIRIAKAEAEKRRTMAVAQEQENLAKVRDMEAKLVEAQAAVPLAMAEAFRSGKLGIMDYQRIQ NIQSDTDMRNALAKPDSDKKQN
Sequences:
>Translated_342_residues MSTLLLQNLLENGTEFYFFIFVLAIVLLIILSVIGKFISLWFQAFVSGTPIPLFNIIGMSLRKIPPREIVNARINLYKAG LKDIHVGDLETHYLAGGHVPNVVEALIAADKANIPLDWRRATAIDLAGRDIKAAVQTSVNPRVIDCPNHGGYITGVAKDG IQLNCRARVTVRTNIAQLVGGATEETIIARVGEGIVSAIGGSDTHKQVLESPQKISKLVLEKGLDSSTAFLILSIDIVEI NLGENIGAKLRTDQAESDIRIAKAEAEKRRTMAVAQEQENLAKVRDMEAKLVEAQAAVPLAMAEAFRSGKLGIMDYQRIQ NIQSDTDMRNALAKPDSDKKQN >Mature_341_residues STLLLQNLLENGTEFYFFIFVLAIVLLIILSVIGKFISLWFQAFVSGTPIPLFNIIGMSLRKIPPREIVNARINLYKAGL KDIHVGDLETHYLAGGHVPNVVEALIAADKANIPLDWRRATAIDLAGRDIKAAVQTSVNPRVIDCPNHGGYITGVAKDGI QLNCRARVTVRTNIAQLVGGATEETIIARVGEGIVSAIGGSDTHKQVLESPQKISKLVLEKGLDSSTAFLILSIDIVEIN LGENIGAKLRTDQAESDIRIAKAEAEKRRTMAVAQEQENLAKVRDMEAKLVEAQAAVPLAMAEAFRSGKLGIMDYQRIQN IQSDTDMRNALAKPDSDKKQN
Specific function: Unknown
COG id: COG4864
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential)
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0365 family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y1737_PARUW (Q6MAD8)
Other databases:
- EMBL: BX908798 - RefSeq: YP_008736.1 - STRING: Q6MAD8 - GeneID: 2779727 - GenomeReviews: BX908798_GR - KEGG: pcu:pc1737 - NMPDR: fig|264201.1.peg.1737 - eggNOG: COG4864 - HOGENOM: HBG302807 - OMA: ENPDMIS - ProtClustDB: PRK13665 - BioCyc: CPRO264201:PC1737-MONOMER - HAMAP: MF_01562 - InterPro: IPR022853
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37287; Mature: 37156
Theoretical pI: Translated: 7.63; Mature: 7.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
HASH(0xf455834)-; HASH(0xe4e0910)-;
Cys/Met content:
0.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTLLLQNLLENGTEFYFFIFVLAIVLLIILSVIGKFISLWFQAFVSGTPIPLFNIIGMS CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH LRKIPPREIVNARINLYKAGLKDIHVGDLETHYLAGGHVPNVVEALIAADKANIPLDWRR HHCCCHHHHHHHHHHHHHCCCCCEEECCCCHHEECCCCCHHHHHHHHHHCCCCCCCCCCH ATAIDLAGRDIKAAVQTSVNPRVIDCPNHGGYITGVAKDGIQLNCRARVTVRTNIAQLVG HEEEECCCCHHHHHHHCCCCCEEEECCCCCCEEEEEECCCEEEEEEEEEEEHHHHHHHHC GATEETIIARVGEGIVSAIGGSDTHKQVLESPQKISKLVLEKGLDSSTAFLILSIDIVEI CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHCCCCCCEEEEEEEEEEEE NLGENIGAKLRTDQAESDIRIAKAEAEKRRTMAVAQEQENLAKVRDMEAKLVEAQAAVPL ECCCCCCCCEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AMAEAFRSGKLGIMDYQRIQNIQSDTDMRNALAKPDSDKKQN HHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHCCCCCCCCCH >Mature Secondary Structure STLLLQNLLENGTEFYFFIFVLAIVLLIILSVIGKFISLWFQAFVSGTPIPLFNIIGMS HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH LRKIPPREIVNARINLYKAGLKDIHVGDLETHYLAGGHVPNVVEALIAADKANIPLDWRR HHCCCHHHHHHHHHHHHHCCCCCEEECCCCHHEECCCCCHHHHHHHHHHCCCCCCCCCCH ATAIDLAGRDIKAAVQTSVNPRVIDCPNHGGYITGVAKDGIQLNCRARVTVRTNIAQLVG HEEEECCCCHHHHHHHCCCCCEEEECCCCCCEEEEEECCCEEEEEEEEEEEHHHHHHHHC GATEETIIARVGEGIVSAIGGSDTHKQVLESPQKISKLVLEKGLDSSTAFLILSIDIVEI CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHCCCCCCEEEEEEEEEEEE NLGENIGAKLRTDQAESDIRIAKAEAEKRRTMAVAQEQENLAKVRDMEAKLVEAQAAVPL ECCCCCCCCEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AMAEAFRSGKLGIMDYQRIQNIQSDTDMRNALAKPDSDKKQN HHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHCCCCCCCCCH
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA