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The map label for this gene is kdsB [C]

Identifier: 46447200

GI number: 46447200

Start: 1878743

End: 1879477

Strand: Reverse

Name: kdsB [C]

Synonym: pc1566

Alternate gene names: 46447200

Gene position: 1879477-1878743 (Counterclockwise)

Preceding gene: 46447201

Following gene: 46447198

Centisome position: 77.84

GC content: 33.33

Gene sequence:

>735_bases
ATGCGTACTGAAATATTTGTTCAAGCTCGAATGGGATCAACGAGGCTTCCTGGAAAAGTTCTTAAACCTGTTTTGGGCAA
ACCTCTACTTGGTTATCTTCTTGAACGATTAAAAGACGTTAAAGAAGTGGATGAGATAGTCATATTATCCACAACTAACT
CACAAGATGATGTAATTGAAGCTTATTGCCAGCAACTAGGTATTTTTTGTTTTCGTGGATCTGAAAACGATGTATTAGAG
CGTTATTATCAGGCAGCATTGATTCGCAAAGTAGATGTGGTTATTCGTATCACTGCCGATTGTCCTTTAATTGATCCAGA
CATTATTGATCAAGTAGTTGGATTATTTAAAAAAGAAATTTTTCAATATGATTATATTTCTAATAGCTTCGAAAGAACTT
TTCCAAGAGGGCTTGACGTAGAAGTTTTCACGTTTGAAGCGCTTCAAACAGCTTTTAAAATGGCAACAAGTCTCATCCAA
AAAGAACACGTCACTCCTTTTATTTATCAAAATCCCGGTCTTTTTAAATTAAAGAATATTGCACATCATCCATCTCTCCA
TCTATATCGTTGGACAGTCGATACACCAGAAGATTTCGAATTAATAAAGTTAATCTTAGAAAATCTTTACCCTCATTGTC
CAAAATTTCGCTTAAACGATATTCTCCATTTGTTAAGTCTAAACCCAGATTGGAATTTAATTAATGCATACATAAAACAA
AAAACTATTTATTAA

Upstream 100 bases:

>100_bases
CCTTACAAAGATATAGTTGTGGATGAAAAGTATGATGCTTCTATTACTCTTCACCACCTAGCAGAATTGAACGATGCGCT
ATTAAAAAAAATCGAGGAAA

Downstream 100 bases:

>100_bases
CATCTATTTATTGAATGATTTCGTATAAAATCAACTTAGTTTAAATTTGTTGATTATAGTTATATTACCAAGTTAAATGT
CTATATTTATGAGTGAGCAA

Product: hypothetical protein

Products: CMP-3-deoxy-D-manno-octulosonate; Diphosphate [C]

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MRTEIFVQARMGSTRLPGKVLKPVLGKPLLGYLLERLKDVKEVDEIVILSTTNSQDDVIEAYCQQLGIFCFRGSENDVLE
RYYQAALIRKVDVVIRITADCPLIDPDIIDQVVGLFKKEIFQYDYISNSFERTFPRGLDVEVFTFEALQTAFKMATSLIQ
KEHVTPFIYQNPGLFKLKNIAHHPSLHLYRWTVDTPEDFELIKLILENLYPHCPKFRLNDILHLLSLNPDWNLINAYIKQ
KTIY

Sequences:

>Translated_244_residues
MRTEIFVQARMGSTRLPGKVLKPVLGKPLLGYLLERLKDVKEVDEIVILSTTNSQDDVIEAYCQQLGIFCFRGSENDVLE
RYYQAALIRKVDVVIRITADCPLIDPDIIDQVVGLFKKEIFQYDYISNSFERTFPRGLDVEVFTFEALQTAFKMATSLIQ
KEHVTPFIYQNPGLFKLKNIAHHPSLHLYRWTVDTPEDFELIKLILENLYPHCPKFRLNDILHLLSLNPDWNLINAYIKQ
KTIY
>Mature_244_residues
MRTEIFVQARMGSTRLPGKVLKPVLGKPLLGYLLERLKDVKEVDEIVILSTTNSQDDVIEAYCQQLGIFCFRGSENDVLE
RYYQAALIRKVDVVIRITADCPLIDPDIIDQVVGLFKKEIFQYDYISNSFERTFPRGLDVEVFTFEALQTAFKMATSLIQ
KEHVTPFIYQNPGLFKLKNIAHHPSLHLYRWTVDTPEDFELIKLILENLYPHCPKFRLNDILHLLSLNPDWNLINAYIKQ
KTIY

Specific function: Activates Kdo (A Required 8-Carbon Sugar) For Incorporation Into Bacterial Lipopolysaccharide In Gram-Negative Bacteria (By Similarity). [C]

COG id: COG1861

COG function: function code M; Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003329 [H]

Pfam domain/function: PF02348 CTP_transf_3 [H]

EC number: 2.7.7.38 [C]

Molecular weight: Translated: 28396; Mature: 28396

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTEIFVQARMGSTRLPGKVLKPVLGKPLLGYLLERLKDVKEVDEIVILSTTNSQDDVIE
CCCEEEEEECCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCEEEEECCCCCHHHHH
AYCQQLGIFCFRGSENDVLERYYQAALIRKVDVVIRITADCPLIDPDIIDQVVGLFKKEI
HHHHHHCCEEEECCCHHHHHHHHHHHHHHHHEEEEEEECCCCCCCHHHHHHHHHHHHHHH
FQYDYISNSFERTFPRGLDVEVFTFEALQTAFKMATSLIQKEHVTPFIYQNPGLFKLKNI
HHHHHHCCHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEHHH
AHHPSLHLYRWTVDTPEDFELIKLILENLYPHCPKFRLNDILHLLSLNPDWNLINAYIKQ
CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
KTIY
HCCC
>Mature Secondary Structure
MRTEIFVQARMGSTRLPGKVLKPVLGKPLLGYLLERLKDVKEVDEIVILSTTNSQDDVIE
CCCEEEEEECCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCEEEEECCCCCHHHHH
AYCQQLGIFCFRGSENDVLERYYQAALIRKVDVVIRITADCPLIDPDIIDQVVGLFKKEI
HHHHHHCCEEEECCCHHHHHHHHHHHHHHHHEEEEEEECCCCCCCHHHHHHHHHHHHHHH
FQYDYISNSFERTFPRGLDVEVFTFEALQTAFKMATSLIQKEHVTPFIYQNPGLFKLKNI
HHHHHHCCHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEHHH
AHHPSLHLYRWTVDTPEDFELIKLILENLYPHCPKFRLNDILHLLSLNPDWNLINAYIKQ
CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
KTIY
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: GSH [C]

Metal ions: Ba2+; Ca2+; Cd2+; Co2+; Mg2+; Mn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): 0.8 {3-deoxy-manno-octulosonate}} 0.39 {3-deoxy-manno-octulosonate}} 0.29 {3-deoxy-manno-octulosonate}} 0.34 {dCTP}} 0.88 {UTP}} 0.22 {CTP}} 0.2 {CTP}} [C]

Substrates: CTP; 3-Deoxy-D-manno-2-octulosonate [C]

Specific reaction: CTP + 3-Deoxy-D-manno-2-octulosonate --> CMP-3-deoxy-D-manno-octulosonate + Diphosphate [C]

General reaction: Nucleotidyl group transfer [C]

Inhibitor: 2,6-Anhydro-3-deoxy-D-glycero-D-talo-octanoate; Diphosphate; Hg2+; 3-deoxy-manno-octulosonate 8-phosphate; N-acetyl neuraminate [C]

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]