Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
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Accession | NC_005861 |
Length | 2,414,465 |
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The map label for this gene is 46447093
Identifier: 46447093
GI number: 46447093
Start: 1734037
End: 1734762
Strand: Reverse
Name: 46447093
Synonym: pc1459
Alternate gene names: NA
Gene position: 1734762-1734037 (Counterclockwise)
Preceding gene: 46447094
Following gene: 46447092
Centisome position: 71.85
GC content: 34.85
Gene sequence:
>726_bases ATGGGAAATATTCGTTTTATTGGGCTGCTTCACAATTTCACTTTATGCACTGTTGCGGGGGCTATTCTGGGTTCTACGTT AGCAATGCCTTGTTATGCTTATGAAGTTCAAGCAAAAGGCGTCAATGTTAACCTAAATGATATTGCGTTTATCGCTAGGA TTGAAAAGCTTTATGAAAAAGCTAAACGCTATATTGATAAGCTAGAACATGGCAAGTTAATGGAAGTGATGTTTGATATC AAAACTGAAATAGAAGGCTATACAGGAAAAAAAATTGATATGGATGCTCAAATTGACGCAATCGAAAGAGAAGCTAAAAA GCAAGGTGCACAATTCAAAAAGGGCGAAATTAAGCAAATTAAAAAAGATTTGAAAAAGAAAGATAAAAAAAATTCTCACA AGACCATGTTTTTATATGACTGTAATATGTATGGCATTGATTTTAACCAAGAGGAATGCGACTTACATTTCGATGCTCTT TGTTTAGCTAAATCGGTTAAAGGTCATCATGACAAAGAAGACAATAAAGAAATTAAGGTTCCTATACGCGTTTATATAGG TATCACGGCTTCTTTATGCGGTTATTTCCTTAGTTTTATTCCCTATCCTATAGCACAAGGGGCATCTAAGTTTTTAATAG CAACAGGTGTCGGTCTTTGTGTTGATGGTACGGTCACACGGATGGAAGAAAACGAGAAGAACGAACAAAATCAAAACAAG AATTAA
Upstream 100 bases:
>100_bases TTTTACTTTGGTTTATGGCATGGGTAATTAGATGCCAAAGCTTTAAAATTTATGAGTTATGTAAACAAGAAAGAAACAAA AGAACAATGAGATTAATACA
Downstream 100 bases:
>100_bases TCTAAAAGGACTTCACCACCGCCCTAAAATATAAGGAGAAATTGATCCTTTTACCAATTTCAGGTAAAGTTAATGTAGTT GGAACAGGGGGGTTACTTAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 241; Mature: 240
Protein sequence:
>241_residues MGNIRFIGLLHNFTLCTVAGAILGSTLAMPCYAYEVQAKGVNVNLNDIAFIARIEKLYEKAKRYIDKLEHGKLMEVMFDI KTEIEGYTGKKIDMDAQIDAIEREAKKQGAQFKKGEIKQIKKDLKKKDKKNSHKTMFLYDCNMYGIDFNQEECDLHFDAL CLAKSVKGHHDKEDNKEIKVPIRVYIGITASLCGYFLSFIPYPIAQGASKFLIATGVGLCVDGTVTRMEENEKNEQNQNK N
Sequences:
>Translated_241_residues MGNIRFIGLLHNFTLCTVAGAILGSTLAMPCYAYEVQAKGVNVNLNDIAFIARIEKLYEKAKRYIDKLEHGKLMEVMFDI KTEIEGYTGKKIDMDAQIDAIEREAKKQGAQFKKGEIKQIKKDLKKKDKKNSHKTMFLYDCNMYGIDFNQEECDLHFDAL CLAKSVKGHHDKEDNKEIKVPIRVYIGITASLCGYFLSFIPYPIAQGASKFLIATGVGLCVDGTVTRMEENEKNEQNQNK N >Mature_240_residues GNIRFIGLLHNFTLCTVAGAILGSTLAMPCYAYEVQAKGVNVNLNDIAFIARIEKLYEKAKRYIDKLEHGKLMEVMFDIK TEIEGYTGKKIDMDAQIDAIEREAKKQGAQFKKGEIKQIKKDLKKKDKKNSHKTMFLYDCNMYGIDFNQEECDLHFDALC LAKSVKGHHDKEDNKEIKVPIRVYIGITASLCGYFLSFIPYPIAQGASKFLIATGVGLCVDGTVTRMEENEKNEQNQNKN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27292; Mature: 27161
Theoretical pI: Translated: 8.26; Mature: 8.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGNIRFIGLLHNFTLCTVAGAILGSTLAMPCYAYEVQAKGVNVNLNDIAFIARIEKLYEK CCCEEEEHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHH AKRYIDKLEHGKLMEVMFDIKTEIEGYTGKKIDMDAQIDAIEREAKKQGAQFKKGEIKQI HHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHCCCCCCCCHHHHH KKDLKKKDKKNSHKTMFLYDCNMYGIDFNQEECDLHFDALCLAKSVKGHHDKEDNKEIKV HHHHHHHHCCCCCCEEEEEECEEEECCCCCHHHCHHHHHHHHHHHHCCCCCCCCCCEEEE PIRVYIGITASLCGYFLSFIPYPIAQGASKFLIATGVGLCVDGTVTRMEENEKNEQNQNK EEEEEEECHHHHHHHHHHHHCCHHHCCCCCEEEECCCCEEECCHHHHHHHHHHHCCCCCC N C >Mature Secondary Structure GNIRFIGLLHNFTLCTVAGAILGSTLAMPCYAYEVQAKGVNVNLNDIAFIARIEKLYEK CCEEEEHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHH AKRYIDKLEHGKLMEVMFDIKTEIEGYTGKKIDMDAQIDAIEREAKKQGAQFKKGEIKQI HHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHCCCCCCCCHHHHH KKDLKKKDKKNSHKTMFLYDCNMYGIDFNQEECDLHFDALCLAKSVKGHHDKEDNKEIKV HHHHHHHHCCCCCCEEEEEECEEEECCCCCHHHCHHHHHHHHHHHHCCCCCCCCCCEEEE PIRVYIGITASLCGYFLSFIPYPIAQGASKFLIATGVGLCVDGTVTRMEENEKNEQNQNK EEEEEEECHHHHHHHHHHHHCCHHHCCCCCEEEECCCCEEECCHHHHHHHHHHHCCCCCC N C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA