Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
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Accession | NC_005861 |
Length | 2,414,465 |
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The map label for this gene is 46446922
Identifier: 46446922
GI number: 46446922
Start: 1542955
End: 1543944
Strand: Reverse
Name: 46446922
Synonym: pc1288
Alternate gene names: NA
Gene position: 1543944-1542955 (Counterclockwise)
Preceding gene: 46446924
Following gene: 46446921
Centisome position: 63.95
GC content: 38.38
Gene sequence:
>990_bases ATGACATTTATCGCTGATTTACATTGCGATCTTCTTTCATATTTAGAGCAAGACGTTAAAAGAACGCCGCATGATCCAGC TGTTCGTTGTTCACTCTCTCAATTGAAAGCAGGGTTTGTCAAATGGCAAACTTTAGCGATTTTCACTGAAACAGATTCTT CGTCTGTCAAAAAAGGACTTTCTCAATTGAAAATTTATCAACAATTATTGAGAGATTTTCCTTTAAACATGCAACCTTAC CAACGTTTCGTGTCTACAATCGAGGAAGCAGCTCCACTTTCTGTATTGATTGCTTTTGAAAATGCCTCTGGTTTTTGCGG AGAACAAGAACCCTTAAAAGTAGGGATGGCGCGTTTAAATAATTTCATCGAAACGATTGCGAAACCTTTTTATATCAGTT TGACTTGGAATAGGGAAAACCGCTTTGGAGGAGGAGCACTCACCCAAATTGGCTTGAAAGAAGAGGGGAAATTATTATTA AAAGAACTCGATCAAAAACAAATTGCGATTGATTTGAGCCATACCTCCGATGCCCTTGCGTATGAAATTATCGATTACAT CGATCAACAGTCGTTAACCCTTCCTTTAATCGCTAGCCATTCTAATGCACGAACTTTGCAATATGTCCCTCGCAATTTAC CTACTGATATTGCCAAAGAGATTTTTAAGAGAAACGGGCTCATTGGATTAAATTTGTATGCTCCCTTTCTCGGAGAGAGA GAAGAATCGATCCTCGAGCATCTTGCATTTTGGCTCGAACTCGGTGGAGAGGATGGTATTTGTTTAGGCACAGATTTTTT CTACGAAGAAGATTTTACTTCAACCTACCAAAACAGAGAGAAAACTTTTTTCTCACAATTTGGAGATGCCTCCACTTACC CAATTCTGCTAGAATTTGTGAAAAAACAACTCAAATTGAGTGATCAACAAATCGACAAATGGGCTTATCAAAATGTTACC CGTTTTCTTGCTTCGCATTTGTCACTTTGA
Upstream 100 bases:
>100_bases TGTAGTTTTCCAAGAGAAGAACCATAAACGCAGATTTATCGCGTCAGTTTATTTCAAATCTTTGGTATGCTCTCTTTTCG ATCAAACTAAGGATAAGGCT
Downstream 100 bases:
>100_bases GCGATTAAGGATTTAAAGTAAGTTGCTTCAAGGTTTGTTCAAGCCAATTGTTTTTAGAATAAATTTCAGTGGTTTTTCCA TCTATCAATGTAAGTGTGGG
Product: hypothetical protein
Products: NA
Alternate protein names: ORF X [H]
Number of amino acids: Translated: 329; Mature: 328
Protein sequence:
>329_residues MTFIADLHCDLLSYLEQDVKRTPHDPAVRCSLSQLKAGFVKWQTLAIFTETDSSSVKKGLSQLKIYQQLLRDFPLNMQPY QRFVSTIEEAAPLSVLIAFENASGFCGEQEPLKVGMARLNNFIETIAKPFYISLTWNRENRFGGGALTQIGLKEEGKLLL KELDQKQIAIDLSHTSDALAYEIIDYIDQQSLTLPLIASHSNARTLQYVPRNLPTDIAKEIFKRNGLIGLNLYAPFLGER EESILEHLAFWLELGGEDGICLGTDFFYEEDFTSTYQNREKTFFSQFGDASTYPILLEFVKKQLKLSDQQIDKWAYQNVT RFLASHLSL
Sequences:
>Translated_329_residues MTFIADLHCDLLSYLEQDVKRTPHDPAVRCSLSQLKAGFVKWQTLAIFTETDSSSVKKGLSQLKIYQQLLRDFPLNMQPY QRFVSTIEEAAPLSVLIAFENASGFCGEQEPLKVGMARLNNFIETIAKPFYISLTWNRENRFGGGALTQIGLKEEGKLLL KELDQKQIAIDLSHTSDALAYEIIDYIDQQSLTLPLIASHSNARTLQYVPRNLPTDIAKEIFKRNGLIGLNLYAPFLGER EESILEHLAFWLELGGEDGICLGTDFFYEEDFTSTYQNREKTFFSQFGDASTYPILLEFVKKQLKLSDQQIDKWAYQNVT RFLASHLSL >Mature_328_residues TFIADLHCDLLSYLEQDVKRTPHDPAVRCSLSQLKAGFVKWQTLAIFTETDSSSVKKGLSQLKIYQQLLRDFPLNMQPYQ RFVSTIEEAAPLSVLIAFENASGFCGEQEPLKVGMARLNNFIETIAKPFYISLTWNRENRFGGGALTQIGLKEEGKLLLK ELDQKQIAIDLSHTSDALAYEIIDYIDQQSLTLPLIASHSNARTLQYVPRNLPTDIAKEIFKRNGLIGLNLYAPFLGERE ESILEHLAFWLELGGEDGICLGTDFFYEEDFTSTYQNREKTFFSQFGDASTYPILLEFVKKQLKLSDQQIDKWAYQNVTR FLASHLSL
Specific function: Unknown
COG id: COG2355
COG function: function code E; Zn-dependent dipeptidase, microsomal dipeptidase homolog
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M19 family [H]
Homologues:
Organism=Drosophila melanogaster, GI161083233, Length=201, Percent_Identity=27.8606965174129, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008257 [H]
Pfam domain/function: PF01244 Peptidase_M19 [H]
EC number: NA
Molecular weight: Translated: 37503; Mature: 37372
Theoretical pI: Translated: 4.98; Mature: 4.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFIADLHCDLLSYLEQDVKRTPHDPAVRCSLSQLKAGFVKWQTLAIFTETDSSSVKKGL CCEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEEEEEEEECCCHHHHHHHH SQLKIYQQLLRDFPLNMQPYQRFVSTIEEAAPLSVLIAFENASGFCGEQEPLKVGMARLN HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHHHH NFIETIAKPFYISLTWNRENRFGGGALTQIGLKEEGKLLLKELDQKQIAIDLSHTSDALA HHHHHHCCCEEEEEEECCCCCCCCCHHHCCCCCCCHHHHHHHCCCHHEEEEECCCCHHHH YEIIDYIDQQSLTLPLIASHSNARTLQYVPRNLPTDIAKEIFKRNGLIGLNLYAPFLGER HHHHHHHCCCCCEEEEEECCCCCCCHHHCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCH EESILEHLAFWLELGGEDGICLGTDFFYEEDFTSTYQNREKTFFSQFGDASTYPILLEFV HHHHHHHHHHHHHCCCCCCEEECCHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH KKQLKLSDQQIDKWAYQNVTRFLASHLSL HHHHHCCHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TFIADLHCDLLSYLEQDVKRTPHDPAVRCSLSQLKAGFVKWQTLAIFTETDSSSVKKGL CEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEEEEEEEECCCHHHHHHHH SQLKIYQQLLRDFPLNMQPYQRFVSTIEEAAPLSVLIAFENASGFCGEQEPLKVGMARLN HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHHHH NFIETIAKPFYISLTWNRENRFGGGALTQIGLKEEGKLLLKELDQKQIAIDLSHTSDALA HHHHHHCCCEEEEEEECCCCCCCCCHHHCCCCCCCHHHHHHHCCCHHEEEEECCCCHHHH YEIIDYIDQQSLTLPLIASHSNARTLQYVPRNLPTDIAKEIFKRNGLIGLNLYAPFLGER HHHHHHHCCCCCEEEEEECCCCCCCHHHCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCH EESILEHLAFWLELGGEDGICLGTDFFYEEDFTSTYQNREKTFFSQFGDASTYPILLEFV HHHHHHHHHHHHHCCCCCCEEECCHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH KKQLKLSDQQIDKWAYQNVTRFLASHLSL HHHHHCCHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1313537 [H]