Definition Candidatus Protochlamydia amoebophila UWE25, complete genome.
Accession NC_005861
Length 2,414,465

Click here to switch to the map view.

The map label for this gene is 46446408

Identifier: 46446408

GI number: 46446408

Start: 955262

End: 955939

Strand: Direct

Name: 46446408

Synonym: pc0774

Alternate gene names: NA

Gene position: 955262-955939 (Clockwise)

Preceding gene: 46446407

Following gene: 46446411

Centisome position: 39.56

GC content: 37.32

Gene sequence:

>678_bases
ATGGATCCTATAAATATTTTCAGATCATGGACAACAACACATAGAAATGATTTTCCTTCGCACACAATTGTAACTGATGC
AATTATGGCAGTTGCAACGAGTGTAATTTCATTAGCTTTTGCCGACGCTTATCAAAGACAGTCTCCTCAATTTTCAGCAA
TATTGAGAATCGTTCCTGTGATAGCTGTGGCTGTATGGGTAATTAGAAGACTTGATTTTAATGCTGTTTACCTATCGCCA
ACTTTTTCGACAGAGCTGAACACTTTCGATCAACCTCATTACCAAAGCAATCATTTTGGAAGAGTTTGGAATTGGTGTAG
CACTCCATACTATTGGGCAGCCAAAAGAATGTATTTACTTCCATTTATTCCCTTTCCTGTTATCAGTTCTGTACCTAGAA
ATAGGCAATATGACTATGAAAATAATTATGATGTACCAACATATTCAAGCCATTTTCCAGTAATAAGGAATAATGAAATG
CATCTACTTCCTTCAAGGCGCTTTTCTGAAGTGAATCATACCCCTGCAACACCATCCCCATCTTTTCGAGAGAGCTCGTA
TTCATCCATGCCTTTTCCTAATGTAGCTCAACCCTTTAAGACATCAAGTGTATCAACAAGTGCGAGTTTTTCTAGAAATA
CGTTTGGAAATATGCAAGAACTTCCTCAAACACGTTAA

Upstream 100 bases:

>100_bases
TTTTGATTAATACTGCCTTGTATGGTGTTCCTTACAGTGAAGCAGAATTTATTGGTTATCCCGCTTATTAATAATAAATT
AATTAGAAAGGTATCAAATA

Downstream 100 bases:

>100_bases
TTTTAGTGAATAGGATATGCGATATCGGCTGCTTAATACTACGAATTTTATTTAAATGTTTAAAAATTTTTTAAAGCTCG
ATCACGTTGATAATGACGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MDPINIFRSWTTTHRNDFPSHTIVTDAIMAVATSVISLAFADAYQRQSPQFSAILRIVPVIAVAVWVIRRLDFNAVYLSP
TFSTELNTFDQPHYQSNHFGRVWNWCSTPYYWAAKRMYLLPFIPFPVISSVPRNRQYDYENNYDVPTYSSHFPVIRNNEM
HLLPSRRFSEVNHTPATPSPSFRESSYSSMPFPNVAQPFKTSSVSTSASFSRNTFGNMQELPQTR

Sequences:

>Translated_225_residues
MDPINIFRSWTTTHRNDFPSHTIVTDAIMAVATSVISLAFADAYQRQSPQFSAILRIVPVIAVAVWVIRRLDFNAVYLSP
TFSTELNTFDQPHYQSNHFGRVWNWCSTPYYWAAKRMYLLPFIPFPVISSVPRNRQYDYENNYDVPTYSSHFPVIRNNEM
HLLPSRRFSEVNHTPATPSPSFRESSYSSMPFPNVAQPFKTSSVSTSASFSRNTFGNMQELPQTR
>Mature_225_residues
MDPINIFRSWTTTHRNDFPSHTIVTDAIMAVATSVISLAFADAYQRQSPQFSAILRIVPVIAVAVWVIRRLDFNAVYLSP
TFSTELNTFDQPHYQSNHFGRVWNWCSTPYYWAAKRMYLLPFIPFPVISSVPRNRQYDYENNYDVPTYSSHFPVIRNNEM
HLLPSRRFSEVNHTPATPSPSFRESSYSSMPFPNVAQPFKTSSVSTSASFSRNTFGNMQELPQTR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25963; Mature: 25963

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPINIFRSWTTTHRNDFPSHTIVTDAIMAVATSVISLAFADAYQRQSPQFSAILRIVPV
CCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
IAVAVWVIRRLDFNAVYLSPTFSTELNTFDQPHYQSNHFGRVWNWCSTPYYWAAKRMYLL
HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHEEEC
PFIPFPVISSVPRNRQYDYENNYDVPTYSSHFPVIRNNEMHLLPSRRFSEVNHTPATPSP
CCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEECCCHHHHHCCCCCCCCCC
SFRESSYSSMPFPNVAQPFKTSSVSTSASFSRNTFGNMQELPQTR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCC
>Mature Secondary Structure
MDPINIFRSWTTTHRNDFPSHTIVTDAIMAVATSVISLAFADAYQRQSPQFSAILRIVPV
CCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
IAVAVWVIRRLDFNAVYLSPTFSTELNTFDQPHYQSNHFGRVWNWCSTPYYWAAKRMYLL
HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHEEEC
PFIPFPVISSVPRNRQYDYENNYDVPTYSSHFPVIRNNEMHLLPSRRFSEVNHTPATPSP
CCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEECCCHHHHHCCCCCCCCCC
SFRESSYSSMPFPNVAQPFKTSSVSTSASFSRNTFGNMQELPQTR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA