Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
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Accession | NC_005861 |
Length | 2,414,465 |
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The map label for this gene is 46446377
Identifier: 46446377
GI number: 46446377
Start: 917152
End: 919449
Strand: Direct
Name: 46446377
Synonym: pc0743
Alternate gene names: NA
Gene position: 917152-919449 (Clockwise)
Preceding gene: 46446374
Following gene: 46446385
Centisome position: 37.99
GC content: 37.77
Gene sequence:
>2298_bases ATGTATATTCATAATTCAAGATTTAATTCTAGTCATTTCATTGTCAATACAGATTCTCATACTTACTATCGATCGAACAA TCGTTTAAATTTTTCTGAACGAATAAATTTATTATGCAAAAAAATTTTTCAGTCTTCTCTGAACCCATTCTTCAGCTATA TCAATAGAGATCAATTTCAATCTCAATGGAGAGAGATTTTTTGGGGGCGAAAGGAGATCGCCACAAATCGTCCAGGATCT GGTTTACCTTTACCAAGTTCGAGTCAAACTTTATGTTTTGTCCCTCCTTCTTACAAACTGAGCTTTCAGGATAAAACTTC TCTAAGTATCTCTAGTTCTCACATATCTTTGTTAATGGAAAAATCGCTCTATTTTAAGAGTCTTTGGTCGGGAAATTTCC AAGAAACTCTTCAAGATCCTCTCGATTTGACACAAAAAGAGTTTACTTATCTACTCAATTGCCTGGTGGATGCTAGCTTT AAAGTTCCTGTGGAAGATCTTCCTTCTTTCATTCAATTAGCCGATTATTATCAACTGGCAGAAGTTGTAAAAAATTTAGA AGAGCGGTTGCTTGATGCATATAAATCAGAAGAAGGTGAGCTATTTAATTCCACCGAAGACAGCCTAGTAAAATTAAAAG AAGTTTTAAATTTTGCACATCAATATCACTTAGACGCTTTAAAAAATTATCTAGAATTCACAGTCGTGAGTAATTTATTA AATCAGGCGCCTGATTTAACGGAATTTGAAAAAATTTTAAACCACTTCTTAAATGAGATAGAAGAGCTTAATTTTTCAAA GAATGCCCATTTGACTGATGCACATCTCTTAGCGTTAAAAAATTGTGAAAATTTGAAAGTACTTAATCTCCAAGCGTGCC ACAATCTCACGGATGCTGGATTAGCGCATTTAACTCCCTTAGCCGCTTTAAAGCATTTAGATCTGAGTGGATGCGAGCTC ACTGACGATGGATTAGTGCATTTAACGCCCTTAGCCGCTTTACAGCATTTAGATCTGAGCCATTGTAGAAATTTCACCGA TGCTGGATTAGCGCATTTGAAACTCTTAGTGGCTTTACAGCATTTAAACTTGAGCCATTGTGGAAAGCTTACGGACGCTG GATTAGCGCATTTGAAACTCTTAGTGGCTTTACAGCATTTAGATCTGAGCCATTGTAGAAATTTCACCGATGCTGGATTA GCGCATTTGAAACTCTTAGTGGCTTTACAACATTTAAACTTGAGCTATTGTGGAAATCTTACGGACGCTGGATTAGCGCA TTTAACACCTTTAATGGCTTTACAGCATTTAGATCTGAATGGGTGCCATAATCTCACTGACGCTGGATTGACGCATTTAA CGTCCTTAGTGGTTTTACAGTATTTAAATCTGAGTTGGAACTATAACTTCACCGACGCTGGATTAGCACATTTAACACCC TTAATGGCTTTACAGCATTTAAACTTGAGCTATTGTGGAAATTTCACAGATGCTGGATTAGCGCATTTAACTTCCTTAGC CGCTTTAAAGCATTTAGATCTGATTGGATGCGAGCTCACTGACGATGGATTAGCGCATTTGAAACTCTTAGTGGCTTTAC AACATTTAAACTTGAGCTATTGTGGAAAGCTCACTGACGATGGATTAGCGCATTTGAAACTCTTAGTGGCTTTACAGCAT TTAGATCTGAGTGGATGCGATAAACTCACTGGTGCTGGATTAGCGCATTTGAAATTCTTAGTGGCTTTACAGCATTTAAA TCTGAGCCATTGTGGAAAGCTCACTGACGATGGATTAGTGAATTTGACACCCTTAGCGGCTTTACGGCATTTAGATCTGA GTCATTGTGGAAAGCTCACTGGTGCTGGATTAGCGCATTTGAAATTCTTAGTGGCTTTACAGCATTTAAATCTGAGCCAT TGTGGAAAGCTCACGGACGCTGGATTAGTGAATTTATCACCCTTAATGGCTTTACAGCATTTAGATCTGAGTCATTGTGG AAATCTCACGGACGCTGGATTAGTGAATTTATCACCCTTAATGGCTTTACAGCATTTAGATCTGAGTCATTGTGGAAATC TCACGGACGATGGATTAGTGAATTTGAAATTCTTAGTGGCTTTACAGCATTTAGATCTGAGTCATTGTGGAAATCTCACG GACGATGGATTAGCGCATTTATCACCTTTAATAGCTTTACAGCATTTAGATCGGAGTAAATACAATAATCTCACAGACGG TAGTGGATTGGCGCATTTAACGTCCTTAGTGGATTTGCAACATTTAGACCTAAGTTGA
Upstream 100 bases:
>100_bases CTCAATTTAAATTTAATTGCATATTTTTATTTATTACTATTGATATTATTTTATTTATATAATATAATTAAAAGTCATTT AATTAAACTAAAGGATAATT
Downstream 100 bases:
>100_bases TGCGATAAACTCACTGACGTTGGATTAGTAAATTTGACACTTTTAGCGGCTTTAACGCATTTAGATCTGAGTAAATACAA TAATCTCACTGACGTTGGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 765; Mature: 765
Protein sequence:
>765_residues MYIHNSRFNSSHFIVNTDSHTYYRSNNRLNFSERINLLCKKIFQSSLNPFFSYINRDQFQSQWREIFWGRKEIATNRPGS GLPLPSSSQTLCFVPPSYKLSFQDKTSLSISSSHISLLMEKSLYFKSLWSGNFQETLQDPLDLTQKEFTYLLNCLVDASF KVPVEDLPSFIQLADYYQLAEVVKNLEERLLDAYKSEEGELFNSTEDSLVKLKEVLNFAHQYHLDALKNYLEFTVVSNLL NQAPDLTEFEKILNHFLNEIEELNFSKNAHLTDAHLLALKNCENLKVLNLQACHNLTDAGLAHLTPLAALKHLDLSGCEL TDDGLVHLTPLAALQHLDLSHCRNFTDAGLAHLKLLVALQHLNLSHCGKLTDAGLAHLKLLVALQHLDLSHCRNFTDAGL AHLKLLVALQHLNLSYCGNLTDAGLAHLTPLMALQHLDLNGCHNLTDAGLTHLTSLVVLQYLNLSWNYNFTDAGLAHLTP LMALQHLNLSYCGNFTDAGLAHLTSLAALKHLDLIGCELTDDGLAHLKLLVALQHLNLSYCGKLTDDGLAHLKLLVALQH LDLSGCDKLTGAGLAHLKFLVALQHLNLSHCGKLTDDGLVNLTPLAALRHLDLSHCGKLTGAGLAHLKFLVALQHLNLSH CGKLTDAGLVNLSPLMALQHLDLSHCGNLTDAGLVNLSPLMALQHLDLSHCGNLTDDGLVNLKFLVALQHLDLSHCGNLT DDGLAHLSPLIALQHLDRSKYNNLTDGSGLAHLTSLVDLQHLDLS
Sequences:
>Translated_765_residues MYIHNSRFNSSHFIVNTDSHTYYRSNNRLNFSERINLLCKKIFQSSLNPFFSYINRDQFQSQWREIFWGRKEIATNRPGS GLPLPSSSQTLCFVPPSYKLSFQDKTSLSISSSHISLLMEKSLYFKSLWSGNFQETLQDPLDLTQKEFTYLLNCLVDASF KVPVEDLPSFIQLADYYQLAEVVKNLEERLLDAYKSEEGELFNSTEDSLVKLKEVLNFAHQYHLDALKNYLEFTVVSNLL NQAPDLTEFEKILNHFLNEIEELNFSKNAHLTDAHLLALKNCENLKVLNLQACHNLTDAGLAHLTPLAALKHLDLSGCEL TDDGLVHLTPLAALQHLDLSHCRNFTDAGLAHLKLLVALQHLNLSHCGKLTDAGLAHLKLLVALQHLDLSHCRNFTDAGL AHLKLLVALQHLNLSYCGNLTDAGLAHLTPLMALQHLDLNGCHNLTDAGLTHLTSLVVLQYLNLSWNYNFTDAGLAHLTP LMALQHLNLSYCGNFTDAGLAHLTSLAALKHLDLIGCELTDDGLAHLKLLVALQHLNLSYCGKLTDDGLAHLKLLVALQH LDLSGCDKLTGAGLAHLKFLVALQHLNLSHCGKLTDDGLVNLTPLAALRHLDLSHCGKLTGAGLAHLKFLVALQHLNLSH CGKLTDAGLVNLSPLMALQHLDLSHCGNLTDAGLVNLSPLMALQHLDLSHCGNLTDDGLVNLKFLVALQHLDLSHCGNLT DDGLAHLSPLIALQHLDRSKYNNLTDGSGLAHLTSLVDLQHLDLS >Mature_765_residues MYIHNSRFNSSHFIVNTDSHTYYRSNNRLNFSERINLLCKKIFQSSLNPFFSYINRDQFQSQWREIFWGRKEIATNRPGS GLPLPSSSQTLCFVPPSYKLSFQDKTSLSISSSHISLLMEKSLYFKSLWSGNFQETLQDPLDLTQKEFTYLLNCLVDASF KVPVEDLPSFIQLADYYQLAEVVKNLEERLLDAYKSEEGELFNSTEDSLVKLKEVLNFAHQYHLDALKNYLEFTVVSNLL NQAPDLTEFEKILNHFLNEIEELNFSKNAHLTDAHLLALKNCENLKVLNLQACHNLTDAGLAHLTPLAALKHLDLSGCEL TDDGLVHLTPLAALQHLDLSHCRNFTDAGLAHLKLLVALQHLNLSHCGKLTDAGLAHLKLLVALQHLDLSHCRNFTDAGL AHLKLLVALQHLNLSYCGNLTDAGLAHLTPLMALQHLDLNGCHNLTDAGLTHLTSLVVLQYLNLSWNYNFTDAGLAHLTP LMALQHLNLSYCGNFTDAGLAHLTSLAALKHLDLIGCELTDDGLAHLKLLVALQHLNLSYCGKLTDDGLAHLKLLVALQH LDLSGCDKLTGAGLAHLKFLVALQHLNLSHCGKLTDDGLVNLTPLAALRHLDLSHCGKLTGAGLAHLKFLVALQHLNLSH CGKLTDAGLVNLSPLMALQHLDLSHCGNLTDAGLVNLSPLMALQHLDLSHCGNLTDDGLVNLKFLVALQHLDLSHCGNLT DDGLAHLSPLIALQHLDRSKYNNLTDGSGLAHLTSLVDLQHLDLS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI22748931, Length=333, Percent_Identity=33.3333333333333, Blast_Score=147, Evalue=4e-35, Organism=Homo sapiens, GI161333852, Length=512, Percent_Identity=27.9296875, Blast_Score=136, Evalue=6e-32, Organism=Homo sapiens, GI6912466, Length=303, Percent_Identity=28.7128712871287, Blast_Score=110, Evalue=6e-24, Organism=Homo sapiens, GI161333854, Length=447, Percent_Identity=25.7270693512304, Blast_Score=108, Evalue=1e-23, Organism=Homo sapiens, GI284447308, Length=309, Percent_Identity=33.3333333333333, Blast_Score=107, Evalue=4e-23, Organism=Homo sapiens, GI27734755, Length=315, Percent_Identity=33.3333333333333, Blast_Score=100, Evalue=5e-21, Organism=Homo sapiens, GI296531375, Length=264, Percent_Identity=34.8484848484849, Blast_Score=91, Evalue=4e-18, Organism=Homo sapiens, GI284447314, Length=219, Percent_Identity=35.1598173515982, Blast_Score=84, Evalue=6e-16, Organism=Homo sapiens, GI289666746, Length=295, Percent_Identity=31.864406779661, Blast_Score=81, Evalue=4e-15, Organism=Caenorhabditis elegans, GI25151694, Length=310, Percent_Identity=31.6129032258064, Blast_Score=102, Evalue=9e-22, Organism=Caenorhabditis elegans, GI25151696, Length=310, Percent_Identity=31.6129032258064, Blast_Score=102, Evalue=1e-21, Organism=Saccharomyces cerevisiae, GI6322549, Length=335, Percent_Identity=27.1641791044776, Blast_Score=87, Evalue=9e-18, Organism=Drosophila melanogaster, GI17647819, Length=321, Percent_Identity=33.6448598130841, Blast_Score=137, Evalue=4e-32, Organism=Drosophila melanogaster, GI21357913, Length=304, Percent_Identity=30.9210526315789, Blast_Score=107, Evalue=4e-23, Organism=Drosophila melanogaster, GI19921840, Length=541, Percent_Identity=28.2809611829945, Blast_Score=89, Evalue=1e-17, Organism=Drosophila melanogaster, GI24662818, Length=208, Percent_Identity=37.5, Blast_Score=84, Evalue=3e-16, Organism=Drosophila melanogaster, GI24652783, Length=309, Percent_Identity=32.0388349514563, Blast_Score=81, Evalue=3e-15, Organism=Drosophila melanogaster, GI161076545, Length=309, Percent_Identity=32.0388349514563, Blast_Score=81, Evalue=3e-15, Organism=Drosophila melanogaster, GI161076547, Length=309, Percent_Identity=32.0388349514563, Blast_Score=80, Evalue=4e-15, Organism=Drosophila melanogaster, GI161076549, Length=309, Percent_Identity=32.0388349514563, Blast_Score=80, Evalue=4e-15, Organism=Drosophila melanogaster, GI24646754, Length=354, Percent_Identity=28.8135593220339, Blast_Score=76, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 84595; Mature: 84595
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYIHNSRFNSSHFIVNTDSHTYYRSNNRLNFSERINLLCKKIFQSSLNPFFSYINRDQFQ CCCCCCCCCCCEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH SQWREIFWGRKEIATNRPGSGLPLPSSSQTLCFVPPSYKLSFQDKTSLSISSSHISLLME HHHHHHHCCHHHHCCCCCCCCCCCCCCCCEEEEECCCCEEEECCCCCCEECHHHHHHHHH KSLYFKSLWSGNFQETLQDPLDLTQKEFTYLLNCLVDASFKVPVEDLPSFIQLADYYQLA HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH EVVKNLEERLLDAYKSEEGELFNSTEDSLVKLKEVLNFAHQYHLDALKNYLEFTVVSNLL HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NQAPDLTEFEKILNHFLNEIEELNFSKNAHLTDAHLLALKNCENLKVLNLQACHNLTDAG HCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCEEEEHHHHCCCHHHH LAHLTPLAALKHLDLSGCELTDDGLVHLTPLAALQHLDLSHCRNFTDAGLAHLKLLVALQ HHHHHHHHHHHHCCCCCCEECCCCCEEECHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHH HLNLSHCGKLTDAGLAHLKLLVALQHLDLSHCRNFTDAGLAHLKLLVALQHLNLSYCGNL HCCHHHCCCCHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHCCHHHCCCC TDAGLAHLTPLMALQHLDLNGCHNLTDAGLTHLTSLVVLQYLNLSWNYNFTDAGLAHLTP CCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH LMALQHLNLSYCGNFTDAGLAHLTSLAALKHLDLIGCELTDDGLAHLKLLVALQHLNLSY HHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHH CGKLTDDGLAHLKLLVALQHLDLSGCDKLTGAGLAHLKFLVALQHLNLSHCGKLTDDGLV CCCCCCCHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHCCHHHCCCCCCCCCC NLTPLAALRHLDLSHCGKLTGAGLAHLKFLVALQHLNLSHCGKLTDAGLVNLSPLMALQH CCHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCCCCHHHHHHHHH LDLSHCGNLTDAGLVNLSPLMALQHLDLSHCGNLTDDGLVNLKFLVALQHLDLSHCGNLT CCHHHCCCCCCCCCCCHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHCCHHHCCCCC DDGLAHLSPLIALQHLDRSKYNNLTDGSGLAHLTSLVDLQHLDLS CCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCC >Mature Secondary Structure MYIHNSRFNSSHFIVNTDSHTYYRSNNRLNFSERINLLCKKIFQSSLNPFFSYINRDQFQ CCCCCCCCCCCEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH SQWREIFWGRKEIATNRPGSGLPLPSSSQTLCFVPPSYKLSFQDKTSLSISSSHISLLME HHHHHHHCCHHHHCCCCCCCCCCCCCCCCEEEEECCCCEEEECCCCCCEECHHHHHHHHH KSLYFKSLWSGNFQETLQDPLDLTQKEFTYLLNCLVDASFKVPVEDLPSFIQLADYYQLA HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH EVVKNLEERLLDAYKSEEGELFNSTEDSLVKLKEVLNFAHQYHLDALKNYLEFTVVSNLL HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NQAPDLTEFEKILNHFLNEIEELNFSKNAHLTDAHLLALKNCENLKVLNLQACHNLTDAG HCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCEEEEHHHHCCCHHHH LAHLTPLAALKHLDLSGCELTDDGLVHLTPLAALQHLDLSHCRNFTDAGLAHLKLLVALQ HHHHHHHHHHHHCCCCCCEECCCCCEEECHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHH HLNLSHCGKLTDAGLAHLKLLVALQHLDLSHCRNFTDAGLAHLKLLVALQHLNLSYCGNL HCCHHHCCCCHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHCCHHHCCCC TDAGLAHLTPLMALQHLDLNGCHNLTDAGLTHLTSLVVLQYLNLSWNYNFTDAGLAHLTP CCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH LMALQHLNLSYCGNFTDAGLAHLTSLAALKHLDLIGCELTDDGLAHLKLLVALQHLNLSY HHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHH CGKLTDDGLAHLKLLVALQHLDLSGCDKLTGAGLAHLKFLVALQHLNLSHCGKLTDDGLV CCCCCCCHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHCCHHHCCCCCCCCCC NLTPLAALRHLDLSHCGKLTGAGLAHLKFLVALQHLNLSHCGKLTDAGLVNLSPLMALQH CCHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCCCCHHHHHHHHH LDLSHCGNLTDAGLVNLSPLMALQHLDLSHCGNLTDDGLVNLKFLVALQHLDLSHCGNLT CCHHHCCCCCCCCCCCHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHCCHHHCCCCC DDGLAHLSPLIALQHLDRSKYNNLTDGSGLAHLTSLVDLQHLDLS CCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA