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The map label for this gene is rplJ

Identifier: 46446236

GI number: 46446236

Start: 736796

End: 737341

Strand: Direct

Name: rplJ

Synonym: pc0602

Alternate gene names: 46446236

Gene position: 736796-737341 (Clockwise)

Preceding gene: 46446235

Following gene: 46446237

Centisome position: 30.52

GC content: 41.03

Gene sequence:

>546_bases
ATGAGAGAGGAAAAACAACTCCTTAAACAAGAGATTATTGATAAGATTCAGCGTTATCCTGCTTTTGTCATTATGCAATA
TGCTGGATTAACAGCTAACCAAGCAAATGATTTTCGTCGCCAACTGGGAAAAATTGGTGGTGATGTTGAAGTCGTGCGTA
AACGCGTTTTGCTTAAAGCTGCTAAAGATGCTGGACTCGAACTAGACGTTTCTTCTTTAAATGGCCACATTGGTTTGGTG
TTTTTAGGAGAAGATCCGATTGAAGCAACAAAAACAGTTTTTAAATTCAGTCAAGAGCGTGAAAAAATTATCCAAGTCCT
CGGTGGACGTTTTGATGGACAGATTTATAGCGGTGATGATGTTGAAAAACTTTCGAAGTTGCCAAGCAAAGACGAAATGC
GAGCTCAATTCCTCAGTACTCTGGAAGCTCCAATGGCTCAAACCTTGGCCGTTGTTGAAGCCCTCCTTGCAAGCGTTGCA
TACTGTTTGGATAATAAAAGCAAGCAAGGAAGCGAGGAACCAGAAAATAGCGCAAGTGAAGCCTAA

Upstream 100 bases:

>100_bases
GGTCACTATATGAGATCGCTAGCCATTTCCTCTACAATGGGGCCTGGCCTTAAAATTGACCTACGCGAATCTGATTTAGC
AGCTAAGGAGTCATAAACTT

Downstream 100 bases:

>100_bases
GGTTAATCCATTCCACTAGAATTATTAACAGAAGTTATAGAAAATTAAGAGGTAAATACCGTGAGTAAGAAAAAAACAGA
AGAACTAGTCGATGCACTAA

Product: 50S ribosomal protein L10

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MREEKQLLKQEIIDKIQRYPAFVIMQYAGLTANQANDFRRQLGKIGGDVEVVRKRVLLKAAKDAGLELDVSSLNGHIGLV
FLGEDPIEATKTVFKFSQEREKIIQVLGGRFDGQIYSGDDVEKLSKLPSKDEMRAQFLSTLEAPMAQTLAVVEALLASVA
YCLDNKSKQGSEEPENSASEA

Sequences:

>Translated_181_residues
MREEKQLLKQEIIDKIQRYPAFVIMQYAGLTANQANDFRRQLGKIGGDVEVVRKRVLLKAAKDAGLELDVSSLNGHIGLV
FLGEDPIEATKTVFKFSQEREKIIQVLGGRFDGQIYSGDDVEKLSKLPSKDEMRAQFLSTLEAPMAQTLAVVEALLASVA
YCLDNKSKQGSEEPENSASEA
>Mature_181_residues
MREEKQLLKQEIIDKIQRYPAFVIMQYAGLTANQANDFRRQLGKIGGDVEVVRKRVLLKAAKDAGLELDVSSLNGHIGLV
FLGEDPIEATKTVFKFSQEREKIIQVLGGRFDGQIYSGDDVEKLSKLPSKDEMRAQFLSTLEAPMAQTLAVVEALLASVA
YCLDNKSKQGSEEPENSASEA

Specific function: Unknown

COG id: COG0244

COG function: function code J; Ribosomal protein L10

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L10P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL10_PARUW (Q6MDM3)

Other databases:

- EMBL:   BX908798
- RefSeq:   YP_007601.1
- ProteinModelPortal:   Q6MDM3
- SMR:   Q6MDM3
- STRING:   Q6MDM3
- GeneID:   2779539
- GenomeReviews:   BX908798_GR
- KEGG:   pcu:pc0602
- NMPDR:   fig|264201.1.peg.602
- eggNOG:   COG0244
- HOGENOM:   HBG414036
- OMA:   KRIFFKA
- ProtClustDB:   PRK00099
- BioCyc:   CPRO264201:PC0602-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00362
- InterPro:   IPR022973
- InterPro:   IPR001790

Pfam domain/function: PF00466 Ribosomal_L10

EC number: NA

Molecular weight: Translated: 20033; Mature: 20033

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: PS01109 RIBOSOMAL_L10

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREEKQLLKQEIIDKIQRYPAFVIMQYAGLTANQANDFRRQLGKIGGDVEVVRKRVLLKA
CCHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
AKDAGLELDVSSLNGHIGLVFLGEDPIEATKTVFKFSQEREKIIQVLGGRFDGQIYSGDD
HHHCCCEEEHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCC
VEKLSKLPSKDEMRAQFLSTLEAPMAQTLAVVEALLASVAYCLDNKSKQGSEEPENSASE
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
A
C
>Mature Secondary Structure
MREEKQLLKQEIIDKIQRYPAFVIMQYAGLTANQANDFRRQLGKIGGDVEVVRKRVLLKA
CCHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
AKDAGLELDVSSLNGHIGLVFLGEDPIEATKTVFKFSQEREKIIQVLGGRFDGQIYSGDD
HHHCCCEEEHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCC
VEKLSKLPSKDEMRAQFLSTLEAPMAQTLAVVEALLASVAYCLDNKSKQGSEEPENSASE
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA