Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
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Accession | NC_005861 |
Length | 2,414,465 |
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The map label for this gene is 46446212
Identifier: 46446212
GI number: 46446212
Start: 711978
End: 713006
Strand: Direct
Name: 46446212
Synonym: pc0578
Alternate gene names: NA
Gene position: 711978-713006 (Clockwise)
Preceding gene: 46446210
Following gene: 46446214
Centisome position: 29.49
GC content: 33.53
Gene sequence:
>1029_bases ATGAGAATTTTGTCGAACCACTTTTCTTGCTATTATTCTTCTTTTTTTGAGGGACATTTTTTATATTTAACCAAACGTCA GAAAACGATCATGGCGATTGCCATAGGCATATTTAGTTGTTTCATAGCTGGCTATTTACTGTATCAAGTAATCAATAAAA GAAAAATAAGGCCTTTGTCAAGTGATGCTGCTTCTTTAAATAGAGAACCAAATTTTGGAAAACCCTTAAGCCCATCAGTC GAAGAGCACAAAACAAATCTTTCGATAGTGAATCCAGCGTTAATCCATAGAATTAATTCTCTGATCTCAAGAGTTAGCTC AATGATTTCAATGGTTTCAGTATTTTCTCCGACGGAAAATGAAAGAGCTGAACAAACAATAGAGGGAGAGATCGACTATA CAGGTGTTACGGTAGATACAACACTGCTTTCCCGGTATTGGAATATCGCTTATAAAAATACTTCTTCATTAGAAGATGCT AATGTCATTCTCATGGGAGAACATCATAAAATTTTAGCCTATCAACAGTTAGAGATTGCAATCATCAATCAATTTGGAAA AGACGATGATATCTTACTTTTAGAAGGGATAGAGTATCAAGAGGAGGCGCAAAATTTTAGTCATATTTATCCTGAATACA ATTTCAACTTAATTTCAAAAAATATACGCATGTTTGGTTTTGAGGTAGACTTATTACCCTTTGATGAAAGTTCAAATATG CTTGAAGAATTAGAGAGAAAAGTTGTTATCCTAAAAACAAAAATAGAGCAAAAAAAAAGATCTGGGTTGCCTCATGATGC CTTAGAAAAAATGATGGAAGAACTTGTCATTTTATTGGAGAAATTATTTCTATCAACGGATAAACGTAACGAATTTCTAA TTACTTCCATTAATCGGCTGTTAGATCGGTACCCTAACAACAAGTTATTTGTCATTGCTGGCAGCTTCCATATAGTAAGT CCCGATTTTAACTTGATCGACCATTTACCCCCAGATGTGAAGTATGCCATATTAACTTATAAAAATTAG
Upstream 100 bases:
>100_bases TTGAAATACCACACAATAATTTGAATAGAAAATAAATCAAAAAAAGATAAGATATAGTATATCGCTAGATATATTTTTAA GAATAGAAAGGAATAAAAAA
Downstream 100 bases:
>100_bases AATGTTTTTAAAAATTGCAGAGAAGAGATTATTCCATCCTTTTAAAAATGCTTAAAAAGACGAGAATAAAAGCTTTATTC ACCAATAAAAATTAATAAAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 342; Mature: 342
Protein sequence:
>342_residues MRILSNHFSCYYSSFFEGHFLYLTKRQKTIMAIAIGIFSCFIAGYLLYQVINKRKIRPLSSDAASLNREPNFGKPLSPSV EEHKTNLSIVNPALIHRINSLISRVSSMISMVSVFSPTENERAEQTIEGEIDYTGVTVDTTLLSRYWNIAYKNTSSLEDA NVILMGEHHKILAYQQLEIAIINQFGKDDDILLLEGIEYQEEAQNFSHIYPEYNFNLISKNIRMFGFEVDLLPFDESSNM LEELERKVVILKTKIEQKKRSGLPHDALEKMMEELVILLEKLFLSTDKRNEFLITSINRLLDRYPNNKLFVIAGSFHIVS PDFNLIDHLPPDVKYAILTYKN
Sequences:
>Translated_342_residues MRILSNHFSCYYSSFFEGHFLYLTKRQKTIMAIAIGIFSCFIAGYLLYQVINKRKIRPLSSDAASLNREPNFGKPLSPSV EEHKTNLSIVNPALIHRINSLISRVSSMISMVSVFSPTENERAEQTIEGEIDYTGVTVDTTLLSRYWNIAYKNTSSLEDA NVILMGEHHKILAYQQLEIAIINQFGKDDDILLLEGIEYQEEAQNFSHIYPEYNFNLISKNIRMFGFEVDLLPFDESSNM LEELERKVVILKTKIEQKKRSGLPHDALEKMMEELVILLEKLFLSTDKRNEFLITSINRLLDRYPNNKLFVIAGSFHIVS PDFNLIDHLPPDVKYAILTYKN >Mature_342_residues MRILSNHFSCYYSSFFEGHFLYLTKRQKTIMAIAIGIFSCFIAGYLLYQVINKRKIRPLSSDAASLNREPNFGKPLSPSV EEHKTNLSIVNPALIHRINSLISRVSSMISMVSVFSPTENERAEQTIEGEIDYTGVTVDTTLLSRYWNIAYKNTSSLEDA NVILMGEHHKILAYQQLEIAIINQFGKDDDILLLEGIEYQEEAQNFSHIYPEYNFNLISKNIRMFGFEVDLLPFDESSNM LEELERKVVILKTKIEQKKRSGLPHDALEKMMEELVILLEKLFLSTDKRNEFLITSINRLLDRYPNNKLFVIAGSFHIVS PDFNLIDHLPPDVKYAILTYKN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39475; Mature: 39475
Theoretical pI: Translated: 6.19; Mature: 6.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRILSNHFSCYYSSFFEGHFLYLTKRQKTIMAIAIGIFSCFIAGYLLYQVINKRKIRPLS CCCHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC SDAASLNREPNFGKPLSPSVEEHKTNLSIVNPALIHRINSLISRVSSMISMVSVFSPTEN CCHHHCCCCCCCCCCCCCCHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCC ERAEQTIEGEIDYTGVTVDTTLLSRYWNIAYKNTSSLEDANVILMGEHHKILAYQQLEIA HHHHHHHCCCEEEEEEEEHHHHHHHHHHHEECCCCCCCCCCEEEEECCCEEEEEEHHHEE IINQFGKDDDILLLEGIEYQEEAQNFSHIYPEYNFNLISKNIRMFGFEVDLLPFDESSNM EEHHCCCCCCEEEEECCCHHHHHCCHHHCCCCCCCEEEECCEEEEEEEEEEEECCCCHHH LEELERKVVILKTKIEQKKRSGLPHDALEKMMEELVILLEKLFLSTDKRNEFLITSINRL HHHHHHCEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH LDRYPNNKLFVIAGSFHIVSPDFNLIDHLPPDVKYAILTYKN HHHCCCCEEEEEECCEEEECCCCHHHHCCCCCCEEEEEEECC >Mature Secondary Structure MRILSNHFSCYYSSFFEGHFLYLTKRQKTIMAIAIGIFSCFIAGYLLYQVINKRKIRPLS CCCHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC SDAASLNREPNFGKPLSPSVEEHKTNLSIVNPALIHRINSLISRVSSMISMVSVFSPTEN CCHHHCCCCCCCCCCCCCCHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCC ERAEQTIEGEIDYTGVTVDTTLLSRYWNIAYKNTSSLEDANVILMGEHHKILAYQQLEIA HHHHHHHCCCEEEEEEEEHHHHHHHHHHHEECCCCCCCCCCEEEEECCCEEEEEEHHHEE IINQFGKDDDILLLEGIEYQEEAQNFSHIYPEYNFNLISKNIRMFGFEVDLLPFDESSNM EEHHCCCCCCEEEEECCCHHHHHCCHHHCCCCCCCEEEECCEEEEEEEEEEEECCCCHHH LEELERKVVILKTKIEQKKRSGLPHDALEKMMEELVILLEKLFLSTDKRNEFLITSINRL HHHHHHCEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH LDRYPNNKLFVIAGSFHIVSPDFNLIDHLPPDVKYAILTYKN HHHCCCCEEEEEECCEEEECCCCHHHHCCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA