Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
---|---|
Accession | NC_005861 |
Length | 2,414,465 |
Click here to switch to the map view.
The map label for this gene is 46446170
Identifier: 46446170
GI number: 46446170
Start: 668299
End: 669543
Strand: Direct
Name: 46446170
Synonym: pc0536
Alternate gene names: NA
Gene position: 668299-669543 (Clockwise)
Preceding gene: 46446169
Following gene: 46446171
Centisome position: 27.68
GC content: 34.62
Gene sequence:
>1245_bases ATGAATCTCAGGACTCTTTTTTCTTCGACTTATTTGACATGGAATACGCTAGCTGCCCATTACCAAACACCGGGCGTTAA AATTACAGATGAATCGAATAAATGGATTCGCAAAACAGCTCCTATTGTCAATGTAGCAAAAAAAGCTCTCCTTATTGTTG CTTTCGCTATCACTACTATTGCAACGGGTTTATTTAGTCTGTTTATTCTTCCTTATCGTATTTACCAATTAAAAAATGCA AATCAATTAGTCGCAGCCGATCTTGCTCTTTTGACTTCAAGTCAAAGAGCCGAATTACGTCTCCAAATTGTAAATTGTAT CAGAGAAAAAGAAAAAAAACATAATTTTCGCCTCACTTCTGAACAATATGAAGAATTTCTTAGAGATATCATGGCTTATT ATGCTCGTAGTAGTGAATTTTATGGTCCTGTTGCTTTAGCATGGACAGAATATTTATTAGAAAAAGCAAATAAAGATAAC CGTAAACTTGTATTTTGCGCACGAGATGGGATTGCTCCTTACGAAATTGCGTTAAAACTAATGCAAAGACCCGACTATCA ACAAAAATATCCTAATTTAGTTGGGGAGGAAAAAATTGTTCTGGCCTATTTGTCAAGAGCAGTAGTGACAGAATCAAATA GAACAGCAGAAAATAAAGAAACCTTTCATAAATATTTAAATCAGTTGGGAATTCGTGATGGGGATCAATGTACTTTTGTT GATATTGGCTTTCAAGGCAGCCAAATTAATAATACCAGAAGTATATTAAAATTTAACAATCACAATATCGATGCATCTTT CAGTTATTTACTTTCTCATACAGATGATGCAGAGGGATTTATTATTTCCGAAGATGATAGCCGAAGAACTGAACAAGAAG CATTCAAACAACTACCAAGCATTATGTCCATACTTTATAAACGTGCTGGTAGTAATTTAGCTACCCATTGGCTAGAAGAC ACTCATCAAAAAAATGTGAAGAGTCCTTCCAGATTAGTTAAAGTAGAAGAAAATGGCAAAATCAAAGTTTATCCAAACAC TTTGGTTCCCGGTGCTAAGGAATTTGTAGCTTCAAAAGGGTCGAAAGAATATTTTATTAGGAAATGGTGCCTAAAAGCAG TTGTGCAAGGCGCTGAAAAATATGATATTGCTACTCTTAATCTGTCTTTTGCAGTTAATCGTTTGGATGAAATGCTAGAC AAAGTTGTAAAAGGGCAATTACCGCTTTTAGTTTCTCATCGATAA
Upstream 100 bases:
>100_bases AAATAATTTGAAATTATATAAAATAGTTATTTTATGTGAATTATTAATAATAAAACAATAAAAACAAGTATTTTTGAATA TTAAATCTTAGGATGGATAA
Downstream 100 bases:
>100_bases TTCTTATCACTTTCTCTTTGATATTAAGGCATTCTACACAGTCAGCTTTAATATCTTTTATAAAACTTAAAATAAATTAA GTAATTATTAAATTTTTATA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 414; Mature: 414
Protein sequence:
>414_residues MNLRTLFSSTYLTWNTLAAHYQTPGVKITDESNKWIRKTAPIVNVAKKALLIVAFAITTIATGLFSLFILPYRIYQLKNA NQLVAADLALLTSSQRAELRLQIVNCIREKEKKHNFRLTSEQYEEFLRDIMAYYARSSEFYGPVALAWTEYLLEKANKDN RKLVFCARDGIAPYEIALKLMQRPDYQQKYPNLVGEEKIVLAYLSRAVVTESNRTAENKETFHKYLNQLGIRDGDQCTFV DIGFQGSQINNTRSILKFNNHNIDASFSYLLSHTDDAEGFIISEDDSRRTEQEAFKQLPSIMSILYKRAGSNLATHWLED THQKNVKSPSRLVKVEENGKIKVYPNTLVPGAKEFVASKGSKEYFIRKWCLKAVVQGAEKYDIATLNLSFAVNRLDEMLD KVVKGQLPLLVSHR
Sequences:
>Translated_414_residues MNLRTLFSSTYLTWNTLAAHYQTPGVKITDESNKWIRKTAPIVNVAKKALLIVAFAITTIATGLFSLFILPYRIYQLKNA NQLVAADLALLTSSQRAELRLQIVNCIREKEKKHNFRLTSEQYEEFLRDIMAYYARSSEFYGPVALAWTEYLLEKANKDN RKLVFCARDGIAPYEIALKLMQRPDYQQKYPNLVGEEKIVLAYLSRAVVTESNRTAENKETFHKYLNQLGIRDGDQCTFV DIGFQGSQINNTRSILKFNNHNIDASFSYLLSHTDDAEGFIISEDDSRRTEQEAFKQLPSIMSILYKRAGSNLATHWLED THQKNVKSPSRLVKVEENGKIKVYPNTLVPGAKEFVASKGSKEYFIRKWCLKAVVQGAEKYDIATLNLSFAVNRLDEMLD KVVKGQLPLLVSHR >Mature_414_residues MNLRTLFSSTYLTWNTLAAHYQTPGVKITDESNKWIRKTAPIVNVAKKALLIVAFAITTIATGLFSLFILPYRIYQLKNA NQLVAADLALLTSSQRAELRLQIVNCIREKEKKHNFRLTSEQYEEFLRDIMAYYARSSEFYGPVALAWTEYLLEKANKDN RKLVFCARDGIAPYEIALKLMQRPDYQQKYPNLVGEEKIVLAYLSRAVVTESNRTAENKETFHKYLNQLGIRDGDQCTFV DIGFQGSQINNTRSILKFNNHNIDASFSYLLSHTDDAEGFIISEDDSRRTEQEAFKQLPSIMSILYKRAGSNLATHWLED THQKNVKSPSRLVKVEENGKIKVYPNTLVPGAKEFVASKGSKEYFIRKWCLKAVVQGAEKYDIATLNLSFAVNRLDEMLD KVVKGQLPLLVSHR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47373; Mature: 47373
Theoretical pI: Translated: 9.59; Mature: 9.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLRTLFSSTYLTWNTLAAHYQTPGVKITDESNKWIRKTAPIVNVAKKALLIVAFAITTI CCCHHHHHHHCEEHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH ATGLFSLFILPYRIYQLKNANQLVAADLALLTSSQRAELRLQIVNCIREKEKKHNFRLTS HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCH EQYEEFLRDIMAYYARSSEFYGPVALAWTEYLLEKANKDNRKLVFCARDGIAPYEIALKL HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHH MQRPDYQQKYPNLVGEEKIVLAYLSRAVVTESNRTAENKETFHKYLNQLGIRDGDQCTFV HHCCCHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEE DIGFQGSQINNTRSILKFNNHNIDASFSYLLSHTDDAEGFIISEDDSRRTEQEAFKQLPS EECCCCCCCCCCHHHEEECCCCCCHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHH IMSILYKRAGSNLATHWLEDTHQKNVKSPSRLVKVEENGKIKVYPNTLVPGAKEFVASKG HHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHEEEEECCCEEEEECCCCCCCHHHHHHCCC SKEYFIRKWCLKAVVQGAEKYDIATLNLSFAVNRLDEMLDKVVKGQLPLLVSHR CHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCEEECCC >Mature Secondary Structure MNLRTLFSSTYLTWNTLAAHYQTPGVKITDESNKWIRKTAPIVNVAKKALLIVAFAITTI CCCHHHHHHHCEEHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH ATGLFSLFILPYRIYQLKNANQLVAADLALLTSSQRAELRLQIVNCIREKEKKHNFRLTS HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCH EQYEEFLRDIMAYYARSSEFYGPVALAWTEYLLEKANKDNRKLVFCARDGIAPYEIALKL HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHH MQRPDYQQKYPNLVGEEKIVLAYLSRAVVTESNRTAENKETFHKYLNQLGIRDGDQCTFV HHCCCHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEE DIGFQGSQINNTRSILKFNNHNIDASFSYLLSHTDDAEGFIISEDDSRRTEQEAFKQLPS EECCCCCCCCCCHHHEEECCCCCCHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHH IMSILYKRAGSNLATHWLEDTHQKNVKSPSRLVKVEENGKIKVYPNTLVPGAKEFVASKG HHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHEEEEECCCEEEEECCCCCCCHHHHHHCCC SKEYFIRKWCLKAVVQGAEKYDIATLNLSFAVNRLDEMLDKVVKGQLPLLVSHR CHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA