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The map label for this gene is csrA

Identifier: 45659265

GI number: 45659265

Start: 4225364

End: 4225618

Strand: Reverse

Name: csrA

Synonym: LIC13448

Alternate gene names: 45659265

Gene position: 4225618-4225364 (Counterclockwise)

Preceding gene: 45659266

Following gene: 45659264

Centisome position: 98.79

GC content: 36.08

Gene sequence:

>255_bases
GTGCTGGTTTTAGCGAGAAGAACGAACGAATCGATTATGATCGGAGACGATATAGAAATCGTCATCGTTGATATAAAAGG
TGATCAGGTTAAGATTGGAGTTAAGGCGCCTAGGGATGTTTCTGTACACAGAGCTGAAGTTTATAAAGACATTCAGGAAG
AAAATAAAAAAGCCGCGGAAACCAAAATAAAACCAGCAGATCTAGGTAAAATTGGAAACATTTTGAAAAAGAAAGATTCT
GGAAAAAAAGAATAA

Upstream 100 bases:

>100_bases
TTAATAAAGAAACACTTATAGGAAAACAGTTTATTTCTAGAAACGAATCTCATTCGGTTCGAGAAAAAATTTTCGAATCG
GCAGCGGTGGAGATCGGTTA

Downstream 100 bases:

>100_bases
CTGTTTCGTGAAAGTTATCTATATCTAAATATTGCATTCAAACATAAGAATGTGTTTCAAAACTGGAAGTTCTTGTAGTT
TGATTTCTGATAAGTACAAT

Product: carbon storage regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 84; Mature: 84

Protein sequence:

>84_residues
MLVLARRTNESIMIGDDIEIVIVDIKGDQVKIGVKAPRDVSVHRAEVYKDIQEENKKAAETKIKPADLGKIGNILKKKDS
GKKE

Sequences:

>Translated_84_residues
MLVLARRTNESIMIGDDIEIVIVDIKGDQVKIGVKAPRDVSVHRAEVYKDIQEENKKAAETKIKPADLGKIGNILKKKDS
GKKE
>Mature_84_residues
MLVLARRTNESIMIGDDIEIVIVDIKGDQVKIGVKAPRDVSVHRAEVYKDIQEENKKAAETKIKPADLGKIGNILKKKDS
GKKE

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding [H]

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family [H]

Homologues:

Organism=Escherichia coli, GI1789047, Length=59, Percent_Identity=49.1525423728814, Blast_Score=73, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003751
- ProDom:   PD009007 [H]

Pfam domain/function: PF02599 CsrA [H]

EC number: NA

Molecular weight: Translated: 9340; Mature: 9340

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVLARRTNESIMIGDDIEIVIVDIKGDQVKIGVKAPRDVSVHRAEVYKDIQEENKKAAE
CEEEEECCCCEEEECCCCEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHCHHHHH
TKIKPADLGKIGNILKKKDSGKKE
CCCCCCCCHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLVLARRTNESIMIGDDIEIVIVDIKGDQVKIGVKAPRDVSVHRAEVYKDIQEENKKAAE
CEEEEECCCCEEEECCCCEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHCHHHHH
TKIKPADLGKIGNILKKKDSGKKE
CCCCCCCCHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA