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The map label for this gene is rpoE [H]

Identifier: 45659106

GI number: 45659106

Start: 4028692

End: 4029201

Strand: Reverse

Name: rpoE [H]

Synonym: LIC13285

Alternate gene names: 45659106

Gene position: 4029201-4028692 (Counterclockwise)

Preceding gene: 45659107

Following gene: 45659105

Centisome position: 94.2

GC content: 33.92

Gene sequence:

>510_bases
ATGGAGCAAAAAGAATTTACTGAACTAATCGATTCAACAAAACATATCGTACTTTCGGCGATTAAAAAGAATCTGTTTGA
GGAATTTCACGATTCTATTGACGATGTAGTACAGGAAACTTACTTCCGGGCTTATAAAAGTCTTTCTGCAAATAAGTTCC
GAGGAGATTCTTCTGTAAGCACCTGGCTTTATACGATTGCAAGAAACGAATCTTTGAGAATGAATCAAAAGAGATCCAGA
CAAACGGCGCTTGCAAGTAAGTTAAAAGAAAAAGTGATCTTTGATAATAATTCCAATCAAGAAAAAGAATCTATTAGTTT
TACTGATTTTGAATTGAAGGATCTTTTAGCAATGCTTCCTTGGAAATATAAATCTGTACTAAGTCTTGTAGGTGAAGGGT
ATAAGGAACAACAGATTGCGGAAAAACTAAGTATTCCAGAAGGAACCGTAAAATCTAGAGTATTTCGCGGAAAACAGATG
TTGAAAAAGAATTTAATAGATAAGCAGTGA

Upstream 100 bases:

>100_bases
AAAATCAAAGAACAACGTCCGGAGTCCAAATTTCCTGTGAATCTTTTTTCTCCGGAGAGAATTATCCTTCCAATACAAGG
AATTTTACATTGAGGTATTC

Downstream 100 bases:

>100_bases
TATAGGATCAAAGCAGAATGGAATCTAACGGAATAGACAAAGAAATTTCGGACAGACTTTATAGCAAAGTTTGGAGTTCT
AAAATCTGCGACGCGGTTTA

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MEQKEFTELIDSTKHIVLSAIKKNLFEEFHDSIDDVVQETYFRAYKSLSANKFRGDSSVSTWLYTIARNESLRMNQKRSR
QTALASKLKEKVIFDNNSNQEKESISFTDFELKDLLAMLPWKYKSVLSLVGEGYKEQQIAEKLSIPEGTVKSRVFRGKQM
LKKNLIDKQ

Sequences:

>Translated_169_residues
MEQKEFTELIDSTKHIVLSAIKKNLFEEFHDSIDDVVQETYFRAYKSLSANKFRGDSSVSTWLYTIARNESLRMNQKRSR
QTALASKLKEKVIFDNNSNQEKESISFTDFELKDLLAMLPWKYKSVLSLVGEGYKEQQIAEKLSIPEGTVKSRVFRGKQM
LKKNLIDKQ
>Mature_169_residues
MEQKEFTELIDSTKHIVLSAIKKNLFEEFHDSIDDVVQETYFRAYKSLSANKFRGDSSVSTWLYTIARNESLRMNQKRSR
QTALASKLKEKVIFDNNSNQEKESISFTDFELKDLLAMLPWKYKSVLSLVGEGYKEQQIAEKLSIPEGTVKSRVFRGKQM
LKKNLIDKQ

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19682; Mature: 19682

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQKEFTELIDSTKHIVLSAIKKNLFEEFHDSIDDVVQETYFRAYKSLSANKFRGDSSVS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHH
TWLYTIARNESLRMNQKRSRQTALASKLKEKVIFDNNSNQEKESISFTDFELKDLLAMLP
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHCC
WKYKSVLSLVGEGYKEQQIAEKLSIPEGTVKSRVFRGKQMLKKNLIDKQ
HHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MEQKEFTELIDSTKHIVLSAIKKNLFEEFHDSIDDVVQETYFRAYKSLSANKFRGDSSVS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHH
TWLYTIARNESLRMNQKRSRQTALASKLKEKVIFDNNSNQEKESISFTDFELKDLLAMLP
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHCC
WKYKSVLSLVGEGYKEQQIAEKLSIPEGTVKSRVFRGKQMLKKNLIDKQ
HHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]