Click here to switch to the map view.

The map label for this gene is flaB [H]

Identifier: 45657753

GI number: 45657753

Start: 2287676

End: 2288521

Strand: Reverse

Name: flaB [H]

Synonym: LIC11890

Alternate gene names: 45657753

Gene position: 2288521-2287676 (Counterclockwise)

Preceding gene: 45657754

Following gene: 45657752

Centisome position: 53.51

GC content: 45.15

Gene sequence:

>846_bases
ATGATCATTAATCACAACTTAGCCGCGATCAATTCCCATCGCGTTCTGAAGTTTCAGAATAACGAAGTAGCAAAGAATAT
GGAAACTCTTTCTTCCGGTATGCGTATCAATCGCGCCGGAGACGATGCTTCCGGTCTTGCCGTTTCTGAAAAAATGAGAA
CGCAAGTGAAAGGTCTCAGACAAGCTGAGAGAAACACCGAAGACGGCATGTCTTTGATCCAGACTACGGAAGGATATTTA
CAGGAAACGAATGATATCATCCAAAGAATCCGGGTTCTTGCTATTCAGTCTTCTAACGGAATCTACAGCGCCGAAGATCG
CCAGATGATTCAAGTAGAGGTTTCTCAGCTCGTAGACGAGATTGATCGTATCGCTTCTCAGGCTGAATTCAACAAGATGG
CTCTCCTTCAGGGGGACTTTGCAAGAGGTTCTAGAACTTCTTCTATGTGGTTCCATATCGGACCGAACCAGCACCAGAGA
GAAAGAGTGTACATCGCTACCATGACGGCGAAGTCTCTTAATCTCATTAAGGCTGACGGTTCTCTCCTGACTCTATCTAC
AGCTGAATTCGCCAATGACGCTATTGGAACTCTGGATGACGCTTTGATGAAAATCAATAAACAAAGAGCGAATTTAGGGG
CATACTTCAACAGATTGGAACACGCTTCCAAAGGTTTGATGGTTGCTTACGAAAATATCCAGGCTTCAGAGTCGAGAATC
AGGGACACAGATATGGCGGAGGAAACTGTTGCGTTCACTAAGAATCAGATTCTGGTTCAGTCGGGAACAGCAATGCTTGC
TCAGGCTAACGTAAGACCTCAGTCGGTTCTGCAGCTTCTTAGATAA

Upstream 100 bases:

>100_bases
AAATCCTTTCGATATAAATAAAAATATTTGGCCAAAACCAAACTCACAAGGGGCTCGGGCACGGATGCCGGAGTCATGAT
CAGTTTCAAGGAGGAAACCC

Downstream 100 bases:

>100_bases
GATTTTAATCCTTAAAGGTTGAAATCTGACAATCGTAGAATTTTTAACGATTGTAAGAAACGGTGAACAACTGACCGGAA
GAGGAACACATTTCTTCGGA

Product: flagellin protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MIINHNLAAINSHRVLKFQNNEVAKNMETLSSGMRINRAGDDASGLAVSEKMRTQVKGLRQAERNTEDGMSLIQTTEGYL
QETNDIIQRIRVLAIQSSNGIYSAEDRQMIQVEVSQLVDEIDRIASQAEFNKMALLQGDFARGSRTSSMWFHIGPNQHQR
ERVYIATMTAKSLNLIKADGSLLTLSTAEFANDAIGTLDDALMKINKQRANLGAYFNRLEHASKGLMVAYENIQASESRI
RDTDMAEETVAFTKNQILVQSGTAMLAQANVRPQSVLQLLR

Sequences:

>Translated_281_residues
MIINHNLAAINSHRVLKFQNNEVAKNMETLSSGMRINRAGDDASGLAVSEKMRTQVKGLRQAERNTEDGMSLIQTTEGYL
QETNDIIQRIRVLAIQSSNGIYSAEDRQMIQVEVSQLVDEIDRIASQAEFNKMALLQGDFARGSRTSSMWFHIGPNQHQR
ERVYIATMTAKSLNLIKADGSLLTLSTAEFANDAIGTLDDALMKINKQRANLGAYFNRLEHASKGLMVAYENIQASESRI
RDTDMAEETVAFTKNQILVQSGTAMLAQANVRPQSVLQLLR
>Mature_281_residues
MIINHNLAAINSHRVLKFQNNEVAKNMETLSSGMRINRAGDDASGLAVSEKMRTQVKGLRQAERNTEDGMSLIQTTEGYL
QETNDIIQRIRVLAIQSSNGIYSAEDRQMIQVEVSQLVDEIDRIASQAEFNKMALLQGDFARGSRTSSMWFHIGPNQHQR
ERVYIATMTAKSLNLIKADGSLLTLSTAEFANDAIGTLDDALMKINKQRANLGAYFNRLEHASKGLMVAYENIQASESRI
RDTDMAEETVAFTKNQILVQSGTAMLAQANVRPQSVLQLLR

Specific function: Component of the core of the flagella (Probable) [H]

COG id: COG1344

COG function: function code N; Flagellin and related hook-associated proteins

Gene ontology:

Cell location: Periplasmic flagellum. Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial flagellin family [H]

Homologues:

Organism=Escherichia coli, GI1788232, Length=175, Percent_Identity=38.8571428571429, Blast_Score=120, Evalue=9e-29,

Paralogues:

None

Copy number: 200,000-400,000 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001492
- InterPro:   IPR001029 [H]

Pfam domain/function: PF00700 Flagellin_C; PF00669 Flagellin_N [H]

EC number: NA

Molecular weight: Translated: 31306; Mature: 31306

Theoretical pI: Translated: 7.10; Mature: 7.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIINHNLAAINSHRVLKFQNNEVAKNMETLSSGMRINRAGDDASGLAVSEKMRTQVKGLR
CEECCCEEEECCCEEEEECCCHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHH
QAERNTEDGMSLIQTTEGYLQETNDIIQRIRVLAIQSSNGIYSAEDRQMIQVEVSQLVDE
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEECCCCCHHHHHHHHHHHHH
IDRIASQAEFNKMALLQGDFARGSRTSSMWFHIGPNQHQRERVYIATMTAKSLNLIKADG
HHHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCCCCCEEEEEEEECCCCEEEECCC
SLLTLSTAEFANDAIGTLDDALMKINKQRANLGAYFNRLEHASKGLMVAYENIQASESRI
CEEEEEHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
RDTDMAEETVAFTKNQILVQSGTAMLAQANVRPQSVLQLLR
CCCHHHHHHHHHHHCEEEEECCCEEEEECCCCHHHHHHHHC
>Mature Secondary Structure
MIINHNLAAINSHRVLKFQNNEVAKNMETLSSGMRINRAGDDASGLAVSEKMRTQVKGLR
CEECCCEEEECCCEEEEECCCHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHH
QAERNTEDGMSLIQTTEGYLQETNDIIQRIRVLAIQSSNGIYSAEDRQMIQVEVSQLVDE
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEECCCCCHHHHHHHHHHHHH
IDRIASQAEFNKMALLQGDFARGSRTSSMWFHIGPNQHQRERVYIATMTAKSLNLIKADG
HHHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCCCCCEEEEEEEECCCCEEEECCC
SLLTLSTAEFANDAIGTLDDALMKINKQRANLGAYFNRLEHASKGLMVAYENIQASESRI
CEEEEEHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
RDTDMAEETVAFTKNQILVQSGTAMLAQANVRPQSVLQLLR
CCCHHHHHHHHHHHCEEEEECCCEEEEECCCCHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA