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The map label for this gene is fliN [H]

Identifier: 45657709

GI number: 45657709

Start: 2240718

End: 2241254

Strand: Reverse

Name: fliN [H]

Synonym: LIC11846

Alternate gene names: 45657709

Gene position: 2241254-2240718 (Counterclockwise)

Preceding gene: 45657714

Following gene: 45657704

Centisome position: 52.4

GC content: 45.62

Gene sequence:

>537_bases
ATGGGAGAAGGGTCACTCTCACAAGAGGATATAGACGCACTTTTAACTGGCGGTGGTGGAGAATCTGCTGCACCTTCAGG
CGGTGGCGGGTCTGATTTCAATCTGAGTGGTGAATTAGATTCACTTCTCGGAGGTGAAGGTGGAGGAACTGGGACTGGGG
GAGGGGATAGCTCCGGAACTGATTCTCCTTCTTTTGCAGATATTTCCGCAGCTTTGGGACCTTCTCCAACTCCAACTCCT
GCGCCTGCAGCACCTAGACCGACTTCTCGTCAGTCTTCTCCGTCTCAATCCACAAATTTAAACTTACTCATGGATGTAAA
CCTAGCTCTTACTGTAGAGTTGGGTAGGACAAATATGTTTATCAAAGACGTCAACGGTTTGAATGAAGGTGTTGTCGTAG
AATTAGATAAAAATGTGGGAGAGGATCTAGATATTCTTGCGAATGGTCGTTTAGTAGGAAGAGGGAAACTGGTTGCAATG
GATGATTTTTACGGGATTCAAATTACGGAGATTGTAGATCAAAGTAGAAGGCTTTAG

Upstream 100 bases:

>100_bases
TCAAAGTGGAAAGTACCTCGTTTCAATCTGAAAATACTCTTGTAGGAATCTATGATTCTGTCGATTTATTTACCATCGGT
TTTGTGAAGGAGAAAAAAAA

Downstream 100 bases:

>100_bases
AATCCGGCCTTACTTTTTTATAGCTGTTTTAGTTGTTCCTATAAATGTGGTAGGTTTCCACAGAAACCGTTGTATGATTT
ATAGTTTTTAGTATTCTCTG

Product: flagellar motor switch protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 177

Protein sequence:

>178_residues
MGEGSLSQEDIDALLTGGGGESAAPSGGGGSDFNLSGELDSLLGGEGGGTGTGGGDSSGTDSPSFADISAALGPSPTPTP
APAAPRPTSRQSSPSQSTNLNLLMDVNLALTVELGRTNMFIKDVNGLNEGVVVELDKNVGEDLDILANGRLVGRGKLVAM
DDFYGIQITEIVDQSRRL

Sequences:

>Translated_178_residues
MGEGSLSQEDIDALLTGGGGESAAPSGGGGSDFNLSGELDSLLGGEGGGTGTGGGDSSGTDSPSFADISAALGPSPTPTP
APAAPRPTSRQSSPSQSTNLNLLMDVNLALTVELGRTNMFIKDVNGLNEGVVVELDKNVGEDLDILANGRLVGRGKLVAM
DDFYGIQITEIVDQSRRL
>Mature_177_residues
GEGSLSQEDIDALLTGGGGESAAPSGGGGSDFNLSGELDSLLGGEGGGTGTGGGDSSGTDSPSFADISAALGPSPTPTPA
PAAPRPTSRQSSPSQSTNLNLLMDVNLALTVELGRTNMFIKDVNGLNEGVVVELDKNVGEDLDILANGRLVGRGKLVAMD
DFYGIQITEIVDQSRRL

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Bacterial flagellum basal body (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=80, Percent_Identity=48.75, Blast_Score=77, Evalue=6e-16,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 17920; Mature: 17789

Theoretical pI: Translated: 3.83; Mature: 3.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGEGSLSQEDIDALLTGGGGESAAPSGGGGSDFNLSGELDSLLGGEGGGTGTGGGDSSGT
CCCCCCCHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCC
DSPSFADISAALGPSPTPTPAPAAPRPTSRQSSPSQSTNLNLLMDVNLALTVELGRTNMF
CCCCCEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEECCCEEE
IKDVNGLNEGVVVELDKNVGEDLDILANGRLVGRGKLVAMDDFYGIQITEIVDQSRRL
EEECCCCCCCEEEEECCCCCCCEEEEECCEEECCCEEEEECCCCCEEHHHHHHHHCCC
>Mature Secondary Structure 
GEGSLSQEDIDALLTGGGGESAAPSGGGGSDFNLSGELDSLLGGEGGGTGTGGGDSSGT
CCCCCCHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCC
DSPSFADISAALGPSPTPTPAPAAPRPTSRQSSPSQSTNLNLLMDVNLALTVELGRTNMF
CCCCCEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEECCCEEE
IKDVNGLNEGVVVELDKNVGEDLDILANGRLVGRGKLVAMDDFYGIQITEIVDQSRRL
EEECCCCCCCEEEEECCCCCCCEEEEECCEEECCCEEEEECCCCCEEHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9403685 [H]