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The map label for this gene is 45657437

Identifier: 45657437

GI number: 45657437

Start: 1925052

End: 1925402

Strand: Direct

Name: 45657437

Synonym: LIC11564

Alternate gene names: NA

Gene position: 1925052-1925402 (Clockwise)

Preceding gene: 45657436

Following gene: 45657438

Centisome position: 45.01

GC content: 32.76

Gene sequence:

>351_bases
TTGAGTAAATCGAAAAAAAGAAAAGGTGACGAAGGAGAGTCTATCGCATCCAACTTTTTAATCAGCCTAGATCATGAAAT
TCTAAAACGAAATTATCGTTTTCTTCATTGTGAGATCGACATAATCTCTGTGAAAGAGGAAGTTTTGTATTTTTCAGAAG
TGAAATTTTGGAAAGAGTTTAAGTTCTTTGATCCTAGGTTTACATTCAACCTCGCAAAACAAACTAAGATGAGAAAGGCG
GCTAAGGGATTTCTTGCTGAAAATCTTTCCTTTCAAAATCATTTTGTCTCATTTTGTCTTGTCTCCGTAAATGAAAAAAA
GGGATGTAAATATTATCTGGATCTTTTTTGA

Upstream 100 bases:

>100_bases
TTATATTTATAAATTATTGTTTTGTTTATTATAAAATTTGCATAATTTCCGCTTCCCAATCATCGCAAGATGAAAATTTG
TTTTAAAGAGGTCTCTTTGA

Downstream 100 bases:

>100_bases
AATAGTGGTTTAGGTACTTCCAACAAGCACCGAATTTTTAAACTGTCTGCGGGTTCTCAAGGAAGAGAGCCTTAAATCGT
TACAAGGAAGTAACTATGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 115

Protein sequence:

>116_residues
MSKSKKRKGDEGESIASNFLISLDHEILKRNYRFLHCEIDIISVKEEVLYFSEVKFWKEFKFFDPRFTFNLAKQTKMRKA
AKGFLAENLSFQNHFVSFCLVSVNEKKGCKYYLDLF

Sequences:

>Translated_116_residues
MSKSKKRKGDEGESIASNFLISLDHEILKRNYRFLHCEIDIISVKEEVLYFSEVKFWKEFKFFDPRFTFNLAKQTKMRKA
AKGFLAENLSFQNHFVSFCLVSVNEKKGCKYYLDLF
>Mature_115_residues
SKSKKRKGDEGESIASNFLISLDHEILKRNYRFLHCEIDIISVKEEVLYFSEVKFWKEFKFFDPRFTFNLAKQTKMRKAA
KGFLAENLSFQNHFVSFCLVSVNEKKGCKYYLDLF

Specific function: Unknown

COG id: COG0792

COG function: function code L; Predicted endonuclease distantly related to archaeal Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0102 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1564_LEPIC (Q72S23)

Other databases:

- EMBL:   AE016823
- RefSeq:   YP_001523.1
- GeneID:   2771408
- GenomeReviews:   AE016823_GR
- KEGG:   lic:LIC11564
- NMPDR:   fig|267671.1.peg.1523
- HOGENOM:   HBG527537
- OMA:   GESIASN
- ProtClustDB:   PRK12497
- BioCyc:   LINT267671:LIC_11564-MONOMER
- HAMAP:   MF_00048
- InterPro:   IPR011856
- InterPro:   IPR011335
- InterPro:   IPR003509
- Gene3D:   G3DSA:3.40.1350.10

Pfam domain/function: PF02021 UPF0102; SSF52980 Restrict_endonuc_II-like_core

EC number: NA

Molecular weight: Translated: 13812; Mature: 13681

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKSKKRKGDEGESIASNFLISLDHEILKRNYRFLHCEIDIISVKEEVLYFSEVKFWKEF
CCCCCCCCCCCCHHHHHHHHHCCCHHHHHCCCEEEEEEEEEEEHHHHHHHHHHHHHHHHH
KFFDPRFTFNLAKQTKMRKAAKGFLAENLSFQNHFVSFCLVSVNEKKGCKYYLDLF
CCCCCCEEEHHHHHHHHHHHHHHHHHHCCCHHHHEEEHEEEECCCCCCCEEEEECC
>Mature Secondary Structure 
SKSKKRKGDEGESIASNFLISLDHEILKRNYRFLHCEIDIISVKEEVLYFSEVKFWKEF
CCCCCCCCCCCHHHHHHHHHCCCHHHHHCCCEEEEEEEEEEEHHHHHHHHHHHHHHHHH
KFFDPRFTFNLAKQTKMRKAAKGFLAENLSFQNHFVSFCLVSVNEKKGCKYYLDLF
CCCCCCEEEHHHHHHHHHHHHHHHHHHCCCHHHHEEEHEEEECCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA