| Definition | Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_005823 |
| Length | 4,277,185 |
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The map label for this gene is rpoN
Identifier: 45657418
GI number: 45657418
Start: 1907249
End: 1908670
Strand: Direct
Name: rpoN
Synonym: LIC11545
Alternate gene names: 45657418
Gene position: 1907249-1908670 (Clockwise)
Preceding gene: 45657417
Following gene: 45657419
Centisome position: 44.59
GC content: 35.86
Gene sequence:
>1422_bases GTGAATCTAAGTCAGTCACTGGTTCAAAAACAAACCCAAAAACTTGTGATGACTCAGGATCTAAGACAGTCCATAGAACT TCTACCTTTGTCTACTTTAGAACTTTCTGATAGAATCAATTCCGAACTTGTAGAAAATCCTATGTTGGAAGAAGAATATG CATCGGAAAGAAATAGAACCCCCGATTTATACAGTAGAGACGATTTAAAAAGAAAAGAAAAAAATGATTTTCTCAAAAAC TCAGACGTTAGTTGGCAAGATCATTTTTCTTTAGATAAGGCCGGAGGCGCGGGAACCGACGCGTCAGATCGAAATCAGAA ATACATAGAATCCTCACCGGAAAAAAGCTCCTTATCCGAACATCTTCTTTGGCAGCTTAGGCTTTCCAATTTAAAACCTG ATGAAATTTCCATAGGAGAAATTTTGATTTCCATGTTGAATGATCATGGATTTATTCCGATTCCAATTCCAGATTTATGC ACTGAAATGAAGTTGAATGAGAAAAAAGTTCGTAAGGTGTTGGATCAGATTCATAGGTTGGACCCTATCGGAATTGGAGC CAAGGATGTACAAGAAACTCTTCTGATACAAGCCAAGATTTTAAAACCGGAAGATTTAAATCTACATATTTTAATTCGGG ATCATATTAAGGATTTAGAAAAATTAGATTATAAGTCTATTTCCAAAAAAATGGAAATCCAGTTAGAGTCGGTTGAATCT CTGGCGTCCGAAATTAAAAAGTTAGAACCTTATCCCGCCACGTTGTACACTCCAAATAAACCGGACTATGTAATTCCAGA CGTGATCGTCAGAGAGGTAGACGGGGAATTTGATATTTATATCAATGACGAATGGATTCCTAGACTTAAAGTTAATAAAG AATATAAGAATATTCTAAAAAATGCAAAAGAGTCAGATAAGGAATATATCGCTACAAAACTAAGTTCGGCGGAATGGTTG ATTCGTTCCGTAAATCAAAGAAGACAAACTTTGTTTAAGGTCACTTCGGCGATTATAGAGATGCAAATTGCATTTTTTAA AAAAGGGATTCAGCATATTAGACCACTGACTCTTAAAGACATTGCTGAAAAGTTGGAAATGCACGAGTCCACAATTTCCA GAATCACTTCCAATAAATATATTCAGACTTCGCGCGGAATTATGGAATTAAAATGGTTCTTTTCTTCCGGGGTTCGTTCT ACGGAAGGTGGAATCGAATCTTCTAAAAAAATACACGATCTTATCCGAAACTTAGTCAAAGAAGAACAATCGGACAATCC TCTTTCGGATCAAGAAATTGTAGATGCAATAGGAAAACAAGGAATTGAAATTGCAAGAAGAACCGTCGCTAAATATAGAA AGATTTTGAAAATCCTACCATCCAGCCAGAGAAAAAAAGTCAAGTCTTTGGAGTCTAGATAA
Upstream 100 bases:
>100_bases ATATTATGTATAGCGGTAGAATTTTAATTTCCGGTTCTACTCACGATCTTGTAAATGATCCAGAAACAAGAAGAATCTAT CTAGGCGAGGATTTTACTCT
Downstream 100 bases:
>100_bases GTCTATGTCTATGCCTGGTATTAACGTTTCTAATCTTCTCAATGAACATGAAGAGTTAGGCTTACGTTTACTTGCGGGTC AAAAAGGTCTTACCAATCGG
Product: RNA polymerase sigma-54 factor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 473; Mature: 473
Protein sequence:
>473_residues MNLSQSLVQKQTQKLVMTQDLRQSIELLPLSTLELSDRINSELVENPMLEEEYASERNRTPDLYSRDDLKRKEKNDFLKN SDVSWQDHFSLDKAGGAGTDASDRNQKYIESSPEKSSLSEHLLWQLRLSNLKPDEISIGEILISMLNDHGFIPIPIPDLC TEMKLNEKKVRKVLDQIHRLDPIGIGAKDVQETLLIQAKILKPEDLNLHILIRDHIKDLEKLDYKSISKKMEIQLESVES LASEIKKLEPYPATLYTPNKPDYVIPDVIVREVDGEFDIYINDEWIPRLKVNKEYKNILKNAKESDKEYIATKLSSAEWL IRSVNQRRQTLFKVTSAIIEMQIAFFKKGIQHIRPLTLKDIAEKLEMHESTISRITSNKYIQTSRGIMELKWFFSSGVRS TEGGIESSKKIHDLIRNLVKEEQSDNPLSDQEIVDAIGKQGIEIARRTVAKYRKILKILPSSQRKKVKSLESR
Sequences:
>Translated_473_residues MNLSQSLVQKQTQKLVMTQDLRQSIELLPLSTLELSDRINSELVENPMLEEEYASERNRTPDLYSRDDLKRKEKNDFLKN SDVSWQDHFSLDKAGGAGTDASDRNQKYIESSPEKSSLSEHLLWQLRLSNLKPDEISIGEILISMLNDHGFIPIPIPDLC TEMKLNEKKVRKVLDQIHRLDPIGIGAKDVQETLLIQAKILKPEDLNLHILIRDHIKDLEKLDYKSISKKMEIQLESVES LASEIKKLEPYPATLYTPNKPDYVIPDVIVREVDGEFDIYINDEWIPRLKVNKEYKNILKNAKESDKEYIATKLSSAEWL IRSVNQRRQTLFKVTSAIIEMQIAFFKKGIQHIRPLTLKDIAEKLEMHESTISRITSNKYIQTSRGIMELKWFFSSGVRS TEGGIESSKKIHDLIRNLVKEEQSDNPLSDQEIVDAIGKQGIEIARRTVAKYRKILKILPSSQRKKVKSLESR >Mature_473_residues MNLSQSLVQKQTQKLVMTQDLRQSIELLPLSTLELSDRINSELVENPMLEEEYASERNRTPDLYSRDDLKRKEKNDFLKN SDVSWQDHFSLDKAGGAGTDASDRNQKYIESSPEKSSLSEHLLWQLRLSNLKPDEISIGEILISMLNDHGFIPIPIPDLC TEMKLNEKKVRKVLDQIHRLDPIGIGAKDVQETLLIQAKILKPEDLNLHILIRDHIKDLEKLDYKSISKKMEIQLESVES LASEIKKLEPYPATLYTPNKPDYVIPDVIVREVDGEFDIYINDEWIPRLKVNKEYKNILKNAKESDKEYIATKLSSAEWL IRSVNQRRQTLFKVTSAIIEMQIAFFKKGIQHIRPLTLKDIAEKLEMHESTISRITSNKYIQTSRGIMELKWFFSSGVRS TEGGIESSKKIHDLIRNLVKEEQSDNPLSDQEIVDAIGKQGIEIARRTVAKYRKILKILPSSQRKKVKSLESR
Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is responsible for the expression of the nitrogen fixation genes. The open complex (sigma-54 and core
COG id: COG1508
COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sigma-54 factor family [H]
Homologues:
Organism=Escherichia coli, GI1789594, Length=478, Percent_Identity=35.1464435146443, Blast_Score=301, Evalue=7e-83,
Paralogues:
None
Copy number: 70 (log & stationary phase) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000394 - InterPro: IPR007046 - InterPro: IPR007634 [H]
Pfam domain/function: PF00309 Sigma54_AID; PF04963 Sigma54_CBD; PF04552 Sigma54_DBD [H]
EC number: NA
Molecular weight: Translated: 54600; Mature: 54600
Theoretical pI: Translated: 7.82; Mature: 7.82
Prosite motif: PS00717 SIGMA54_1 ; PS00718 SIGMA54_2 ; PS50044 SIGMA54_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLSQSLVQKQTQKLVMTQDLRQSIELLPLSTLELSDRINSELVENPMLEEEYASERNRT CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC PDLYSRDDLKRKEKNDFLKNSDVSWQDHFSLDKAGGAGTDASDRNQKYIESSPEKSSLSE CCCCCHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHH HLLWQLRLSNLKPDEISIGEILISMLNDHGFIPIPIPDLCTEMKLNEKKVRKVLDQIHRL HHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEECCHHHHHHHHCCCHHHHHHHHHHHHCC DPIGIGAKDVQETLLIQAKILKPEDLNLHILIRDHIKDLEKLDYKSISKKMEIQLESVES CCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH LASEIKKLEPYPATLYTPNKPDYVIPDVIVREVDGEFDIYINDEWIPRLKVNKEYKNILK HHHHHHHCCCCCCEEECCCCCCEECHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHH NAKESDKEYIATKLSSAEWLIRSVNQRRQTLFKVTSAIIEMQIAFFKKGIQHIRPLTLKD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH IAEKLEMHESTISRITSNKYIQTSRGIMELKWFFSSGVRSTEGGIESSKKIHDLIRNLVK HHHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH EEQSDNPLSDQEIVDAIGKQGIEIARRTVAKYRKILKILPSSQRKKVKSLESR HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC >Mature Secondary Structure MNLSQSLVQKQTQKLVMTQDLRQSIELLPLSTLELSDRINSELVENPMLEEEYASERNRT CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC PDLYSRDDLKRKEKNDFLKNSDVSWQDHFSLDKAGGAGTDASDRNQKYIESSPEKSSLSE CCCCCHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHH HLLWQLRLSNLKPDEISIGEILISMLNDHGFIPIPIPDLCTEMKLNEKKVRKVLDQIHRL HHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEECCHHHHHHHHCCCHHHHHHHHHHHHCC DPIGIGAKDVQETLLIQAKILKPEDLNLHILIRDHIKDLEKLDYKSISKKMEIQLESVES CCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH LASEIKKLEPYPATLYTPNKPDYVIPDVIVREVDGEFDIYINDEWIPRLKVNKEYKNILK HHHHHHHCCCCCCEEECCCCCCEECHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHH NAKESDKEYIATKLSSAEWLIRSVNQRRQTLFKVTSAIIEMQIAFFKKGIQHIRPLTLKD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH IAEKLEMHESTISRITSNKYIQTSRGIMELKWFFSSGVRSTEGGIESSKKIHDLIRNLVK HHHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH EEQSDNPLSDQEIVDAIGKQGIEIARRTVAKYRKILKILPSSQRKKVKSLESR HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2999700; 2695747 [H]