Click here to switch to the map view.

The map label for this gene is whiG [H]

Identifier: 45657258

GI number: 45657258

Start: 1697815

End: 1698615

Strand: Direct

Name: whiG [H]

Synonym: LIC11380

Alternate gene names: 45657258

Gene position: 1697815-1698615 (Clockwise)

Preceding gene: 45657257

Following gene: 45657259

Centisome position: 39.69

GC content: 37.58

Gene sequence:

>801_bases
ATGTCCAAAAAATATGAGAAATATAACCAGCAGGATGAGACGGAACTATGGAAATCCTATCGAGAAACCAAAGATCAGGA
CATCCGCTCTTATCTAGTAGAAAAATATTCTCCGCTAGTCAAACACGTAGCAGGTAGAATCGCTATAGGCATGCCTCAGA
ACGTCGAGTTCGACGATCTTGTATCTTATGGAGTTTTTGGACTTTTAGATGCGATCGAAAAATTCGATCCAGAAAGACTG
ATTAAGTTCAAAACGTATGCAATGACTCGAATCAGAGGGAGTATCTTTGACGAACTACGTTCCATCGACTGGATCCCTAG
ATCTATCCGTCAAAAGGCAAAACAACTAGAACAAATTATAGGAATGCTGGAAAACAAAGAAGGCCAGCAAGTAGACGACG
ACGCGATTGCAAAAGAATTGGGAATTTCTATGGAAGAATACAATTCCCTTCTTACAAAAATTAGCGGAACCTCTCTTGTT
TCGTTAAACGACATCTGGTTTTTAGGAGATGAAAACGACGAGGTTTCTTTTATGGAAACTTTAGAATCTCCTATGAATAT
GAATCCAGATACGATTATAGAAAAAGAGGAAATTAAGAATGTAATCGTAGAAGCGATTAAAACCCTGCCTGAAAAGGAAA
AAAAAGTAATCGTATTATATTATTATGAAGATCTAACTTTAAAGGAAATCGGCGAGGTGCTGGAAGTTACTGAATCTAGA
ATTTCGCAGTTACATACTAGAGCCGTTTCTAGATTGAGAAGTAAACTCGGTAAAGTAAAGTCCGTCATTTCTCGTAAGTA
A

Upstream 100 bases:

>100_bases
CAAAAAACTGCTTGATTTCCCCGTTTTTGCACTAAAAAATGCTATTGCAATTTTCTGAGAAGCTCGACACTTTAAATGAA
GGTCTTCCAGATCCGAGCTT

Downstream 100 bases:

>100_bases
TTTTTGATTTACTAGGACGGAGAATATGGGTTCTCTAATACCATTCTTACAAGACCAAAGCAAGGAACTGGATCGTATCC
AGAACGAACAGGTGGAAGTT

Product: RNA polymerase sigma factor WhiG

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 265

Protein sequence:

>266_residues
MSKKYEKYNQQDETELWKSYRETKDQDIRSYLVEKYSPLVKHVAGRIAIGMPQNVEFDDLVSYGVFGLLDAIEKFDPERL
IKFKTYAMTRIRGSIFDELRSIDWIPRSIRQKAKQLEQIIGMLENKEGQQVDDDAIAKELGISMEEYNSLLTKISGTSLV
SLNDIWFLGDENDEVSFMETLESPMNMNPDTIIEKEEIKNVIVEAIKTLPEKEKKVIVLYYYEDLTLKEIGEVLEVTESR
ISQLHTRAVSRLRSKLGKVKSVISRK

Sequences:

>Translated_266_residues
MSKKYEKYNQQDETELWKSYRETKDQDIRSYLVEKYSPLVKHVAGRIAIGMPQNVEFDDLVSYGVFGLLDAIEKFDPERL
IKFKTYAMTRIRGSIFDELRSIDWIPRSIRQKAKQLEQIIGMLENKEGQQVDDDAIAKELGISMEEYNSLLTKISGTSLV
SLNDIWFLGDENDEVSFMETLESPMNMNPDTIIEKEEIKNVIVEAIKTLPEKEKKVIVLYYYEDLTLKEIGEVLEVTESR
ISQLHTRAVSRLRSKLGKVKSVISRK
>Mature_265_residues
SKKYEKYNQQDETELWKSYRETKDQDIRSYLVEKYSPLVKHVAGRIAIGMPQNVEFDDLVSYGVFGLLDAIEKFDPERLI
KFKTYAMTRIRGSIFDELRSIDWIPRSIRQKAKQLEQIIGMLENKEGQQVDDDAIAKELGISMEEYNSLLTKISGTSLVS
LNDIWFLGDENDEVSFMETLESPMNMNPDTIIEKEEIKNVIVEAIKTLPEKEKKVIVLYYYEDLTLKEIGEVLEVTESRI
SQLHTRAVSRLRSKLGKVKSVISRK

Specific function: The level of this sigma factor may be crucial in determining the developmental fate of hyphae [H]

COG id: COG1191

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

Organism=Escherichia coli, GI1788231, Length=230, Percent_Identity=44.3478260869565, Blast_Score=197, Evalue=8e-52,
Organism=Escherichia coli, GI1789098, Length=236, Percent_Identity=26.271186440678, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000943
- InterPro:   IPR007627
- InterPro:   IPR007624
- InterPro:   IPR007630
- InterPro:   IPR012845
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04539 Sigma70_r3; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 30872; Mature: 30741

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: PS00715 SIGMA70_1 ; PS00716 SIGMA70_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKYEKYNQQDETELWKSYRETKDQDIRSYLVEKYSPLVKHVAGRIAIGMPQNVEFDDL
CCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHH
VSYGVFGLLDAIEKFDPERLIKFKTYAMTRIRGSIFDELRSIDWIPRSIRQKAKQLEQII
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GMLENKEGQQVDDDAIAKELGISMEEYNSLLTKISGTSLVSLNDIWFLGDENDEVSFMET
HHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCEEEECCCCCCHHHHHH
LESPMNMNPDTIIEKEEIKNVIVEAIKTLPEKEKKVIVLYYYEDLTLKEIGEVLEVTESR
HHCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHH
ISQLHTRAVSRLRSKLGKVKSVISRK
HHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SKKYEKYNQQDETELWKSYRETKDQDIRSYLVEKYSPLVKHVAGRIAIGMPQNVEFDDL
CCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHH
VSYGVFGLLDAIEKFDPERLIKFKTYAMTRIRGSIFDELRSIDWIPRSIRQKAKQLEQII
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GMLENKEGQQVDDDAIAKELGISMEEYNSLLTKISGTSLVSLNDIWFLGDENDEVSFMET
HHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCEEEECCCCCCHHHHHH
LESPMNMNPDTIIEKEEIKNVIVEAIKTLPEKEKKVIVLYYYEDLTLKEIGEVLEVTESR
HHCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHH
ISQLHTRAVSRLRSKLGKVKSVISRK
HHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2507166; 12000953 [H]