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The map label for this gene is sufB [C]

Identifier: 45657103

GI number: 45657103

Start: 1503299

End: 1504714

Strand: Direct

Name: sufB [C]

Synonym: LIC11220

Alternate gene names: 45657103

Gene position: 1503299-1504714 (Clockwise)

Preceding gene: 45657102

Following gene: 45657104

Centisome position: 35.15

GC content: 38.35

Gene sequence:

>1416_bases
ATGGAACAAACCCTGGAAAAAAAATCTATCCATGAAGACCGCTATTATCGTCCAGATAATTTTCCCAAAGGTCTTACACG
TAAAGTTGTAGAATCTATTTCTCATATTAAGAATGAACCTGGTTGGCTTACATCCTTCCGTCTTAAAGCTTTTGAAATTT
ACGAACAAAAACCAATGCCTACTTGGGGATTTTTTCCAAACTTCAATGTAGACATCGATTCTTATACTCATTATATAGGC
TCCAATCAACAGAAGAAAAAATCTTGGGACGAAGTTGATCCAGAGGTTCTTAAATCCTTTGAACGTCTGGGAATTCCAGA
ACATGAGCGTAAATATCTGGCCGGAATCGAAGCAATGAATGATTCCGAAACGGTTTACGCTAACGTGAAAAAAGAACTAA
CCGAGTTAGGAATCCTTTTTTGTGATATTGATACTGCGATCCGAGAGTATCCCGAAATAGTAAAAAAATATCTAGGAACG
GTTGTAAGTGTGGGAGATAATAAATTTTCCGCCTTAAACAGTTGTGTTTTTTCGGGGGGTTCTTTTGCATTTGTTCCCAA
AGGTGTAAAAACGCCTATGCCTCTTCAGGCGTATTTTAAAGTGACTGCGGCTTCTTCTGGTCAGTATGAAAGAACTCTTT
TGATTGCGGACGAAGGTGCTGAGTTAGAATATTCAGAAGGTTGTTCTTCGGTTCAAGATAAGGGCACCAATTTTCATACT
GCTGTTGTAGAACTTATTTCCCATAAAAACGCTAAAATCTTTTATACTACGATCCAGAACTGGAAAAAAAATATGTACAA
CTGGACCGTCAAACGCGGGTTATGTTATGAAAGAGGCCATATCACTTGGACGGACGTAAACATAGGCGCAAATACGATCA
AGTATCCTGGAATTGTTTTGCAAGGAGATCATTCTACTGGAGATATTCTTTCTCTTGCATTTGCAGGCGGAGGCCAGATT
CAGGATACTGGAGCTAGAATCATTCACGTTGGTAAAAATACTAGAAGTAATATATTAGCAAAAGGTGTTTCTCTTGACGG
TGGAATTAATTCTTACCGAGGATTAGTTAAATTCACGTCTGGATCTGAAAATTCTTATTCTCATGTAAAATGCGACGGTT
TAATGATGGATGACCGTTCTCAGTCTCACGCGTATCCTTACAATGACGTTTCCGGTCAAAATGGTACTTTAAATTATGAA
GCTACCGTTTCTAGGATCGACGAAGATCAACTCTTTTATCTTCAATCCAGAGGTTTGTCAGAAGACGACGCAAAGCTACT
AATTATCAATGGGTTTTGTGAAGGTGTTACCAAACATCTGAATGTAGAGTATTCCGTGGAGATGACACGCCTGATTCGTA
TGATTTTAGAAGACGGTCATGTAATTCAGGAAAATAAAGATTCCGTAGTAAGTTAA

Upstream 100 bases:

>100_bases
GTCTCGTTTCTATGGGCGCTCGATAACTAAAGGGTCGCGTTCGGTAACTCAGATCTCGCTCCCTATGGGTCGCGAGATAT
GTCTAAAAGAGGGATGAAAA

Downstream 100 bases:

>100_bases
TTAGAGTTGTTGAAGAATTGATTTTCTCATTAAAACAAATGGTTAAAATCGTTTTTAGATATGATTTTTTTAACAAACCT
ATTAAAAATTGAAAGTATTC

Product: ABC transporter permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 471; Mature: 471

Protein sequence:

>471_residues
MEQTLEKKSIHEDRYYRPDNFPKGLTRKVVESISHIKNEPGWLTSFRLKAFEIYEQKPMPTWGFFPNFNVDIDSYTHYIG
SNQQKKKSWDEVDPEVLKSFERLGIPEHERKYLAGIEAMNDSETVYANVKKELTELGILFCDIDTAIREYPEIVKKYLGT
VVSVGDNKFSALNSCVFSGGSFAFVPKGVKTPMPLQAYFKVTAASSGQYERTLLIADEGAELEYSEGCSSVQDKGTNFHT
AVVELISHKNAKIFYTTIQNWKKNMYNWTVKRGLCYERGHITWTDVNIGANTIKYPGIVLQGDHSTGDILSLAFAGGGQI
QDTGARIIHVGKNTRSNILAKGVSLDGGINSYRGLVKFTSGSENSYSHVKCDGLMMDDRSQSHAYPYNDVSGQNGTLNYE
ATVSRIDEDQLFYLQSRGLSEDDAKLLIINGFCEGVTKHLNVEYSVEMTRLIRMILEDGHVIQENKDSVVS

Sequences:

>Translated_471_residues
MEQTLEKKSIHEDRYYRPDNFPKGLTRKVVESISHIKNEPGWLTSFRLKAFEIYEQKPMPTWGFFPNFNVDIDSYTHYIG
SNQQKKKSWDEVDPEVLKSFERLGIPEHERKYLAGIEAMNDSETVYANVKKELTELGILFCDIDTAIREYPEIVKKYLGT
VVSVGDNKFSALNSCVFSGGSFAFVPKGVKTPMPLQAYFKVTAASSGQYERTLLIADEGAELEYSEGCSSVQDKGTNFHT
AVVELISHKNAKIFYTTIQNWKKNMYNWTVKRGLCYERGHITWTDVNIGANTIKYPGIVLQGDHSTGDILSLAFAGGGQI
QDTGARIIHVGKNTRSNILAKGVSLDGGINSYRGLVKFTSGSENSYSHVKCDGLMMDDRSQSHAYPYNDVSGQNGTLNYE
ATVSRIDEDQLFYLQSRGLSEDDAKLLIINGFCEGVTKHLNVEYSVEMTRLIRMILEDGHVIQENKDSVVS
>Mature_471_residues
MEQTLEKKSIHEDRYYRPDNFPKGLTRKVVESISHIKNEPGWLTSFRLKAFEIYEQKPMPTWGFFPNFNVDIDSYTHYIG
SNQQKKKSWDEVDPEVLKSFERLGIPEHERKYLAGIEAMNDSETVYANVKKELTELGILFCDIDTAIREYPEIVKKYLGT
VVSVGDNKFSALNSCVFSGGSFAFVPKGVKTPMPLQAYFKVTAASSGQYERTLLIADEGAELEYSEGCSSVQDKGTNFHT
AVVELISHKNAKIFYTTIQNWKKNMYNWTVKRGLCYERGHITWTDVNIGANTIKYPGIVLQGDHSTGDILSLAFAGGGQI
QDTGARIIHVGKNTRSNILAKGVSLDGGINSYRGLVKFTSGSENSYSHVKCDGLMMDDRSQSHAYPYNDVSGQNGTLNYE
ATVSRIDEDQLFYLQSRGLSEDDAKLLIINGFCEGVTKHLNVEYSVEMTRLIRMILEDGHVIQENKDSVVS

Specific function: Unknown

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI87081955, Length=461, Percent_Identity=40.1301518438178, Blast_Score=354, Evalue=6e-99,
Organism=Escherichia coli, GI1787971, Length=144, Percent_Identity=29.1666666666667, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010231
- InterPro:   IPR000825 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 52979; Mature: 52979

Theoretical pI: Translated: 6.20; Mature: 6.20

Prosite motif: PS00761 SPASE_I_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQTLEKKSIHEDRYYRPDNFPKGLTRKVVESISHIKNEPGWLTSFRLKAFEIYEQKPMP
CCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEHHHHHEEEHHHCCCCC
TWGFFPNFNVDIDSYTHYIGSNQQKKKSWDEVDPEVLKSFERLGIPEHERKYLAGIEAMN
CCCCCCCCCCCHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCC
DSETVYANVKKELTELGILFCDIDTAIREYPEIVKKYLGTVVSVGDNKFSALNSCVFSGG
CCCEEEHHHHHHHHHHCEEEEEHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHCCC
SFAFVPKGVKTPMPLQAYFKVTAASSGQYERTLLIADEGAELEYSEGCSSVQDKGTNFHT
CEEEECCCCCCCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCHHHCCCHHHHCCCCHHH
AVVELISHKNAKIFYTTIQNWKKNMYNWTVKRGLCYERGHITWTDVNIGANTIKYPGIVL
HHHHHHHCCCCEEEEEEHHHHHHHHHEEEECCCCEEECCCEEEEEEECCCCEEECCCEEE
QGDHSTGDILSLAFAGGGQIQDTGARIIHVGKNTRSNILAKGVSLDGGINSYRGLVKFTS
ECCCCCCCEEEEEECCCCEEECCCCEEEEECCCCCCHHHEECCCCCCCCCCCCCEEEEEC
GSENSYSHVKCDGLMMDDRSQSHAYPYNDVSGQNGTLNYEATVSRIDEDQLFYLQSRGLS
CCCCCCCEEEECCEEECCCCCCCCCCCCCCCCCCCEEEEEHHHHHCCCCCEEEEECCCCC
EDDAKLLIINGFCEGVTKHLNVEYSVEMTRLIRMILEDGHVIQENKDSVVS
CCCCEEEEEECHHHHHHHHCCEEEEHHHHHHHHHHHHCCCEEECCCCCCCC
>Mature Secondary Structure
MEQTLEKKSIHEDRYYRPDNFPKGLTRKVVESISHIKNEPGWLTSFRLKAFEIYEQKPMP
CCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEHHHHHEEEHHHCCCCC
TWGFFPNFNVDIDSYTHYIGSNQQKKKSWDEVDPEVLKSFERLGIPEHERKYLAGIEAMN
CCCCCCCCCCCHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCC
DSETVYANVKKELTELGILFCDIDTAIREYPEIVKKYLGTVVSVGDNKFSALNSCVFSGG
CCCEEEHHHHHHHHHHCEEEEEHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHCCC
SFAFVPKGVKTPMPLQAYFKVTAASSGQYERTLLIADEGAELEYSEGCSSVQDKGTNFHT
CEEEECCCCCCCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCHHHCCCHHHHCCCCHHH
AVVELISHKNAKIFYTTIQNWKKNMYNWTVKRGLCYERGHITWTDVNIGANTIKYPGIVL
HHHHHHHCCCCEEEEEEHHHHHHHHHEEEECCCCEEECCCEEEEEEECCCCEEECCCEEE
QGDHSTGDILSLAFAGGGQIQDTGARIIHVGKNTRSNILAKGVSLDGGINSYRGLVKFTS
ECCCCCCCEEEEEECCCCEEECCCCEEEEECCCCCCHHHEECCCCCCCCCCCCCEEEEEC
GSENSYSHVKCDGLMMDDRSQSHAYPYNDVSGQNGTLNYEATVSRIDEDQLFYLQSRGLS
CCCCCCCEEEECCEEECCCCCCCCCCCCCCCCCCCEEEEEHHHHHCCCCCEEEEECCCCC
EDDAKLLIINGFCEGVTKHLNVEYSVEMTRLIRMILEDGHVIQENKDSVVS
CCCCEEEEEECHHHHHHHHCCEEEEHHHHHHHHHHHHCCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA