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The map label for this gene is 45656909

Identifier: 45656909

GI number: 45656909

Start: 1256532

End: 1256873

Strand: Direct

Name: 45656909

Synonym: LIC11025

Alternate gene names: NA

Gene position: 1256532-1256873 (Clockwise)

Preceding gene: 45656904

Following gene: 45656910

Centisome position: 29.38

GC content: 34.5

Gene sequence:

>342_bases
ATGAAAATTAAAGTCACCACTAAAAACGACGTCCACATCATCAAGATTGAAGGGCCGATAAAAGCGGGAAATGAGTTCGA
GTTAGGTCAGAAGATAGAAGAATATATTTCCAAAGGTGACGTTCCTAAATTTATCATCGATCTGAAAAAAGTTCCTTTTA
TTAACTCAGCCGGTTTAGGTATGTTTTTGAATATATACAAACACATAGACGGCTTAAAAGGTAGAATGGTTTTTACCAAC
TTAAATTCCGATATTGAAAATCTAATGGAGATTACGAAACTTGCGAGCATCTTCGAAATTTATAAGACTCTCGAAGAAGC
ACTTGAATCCTTCGAATACTAA

Upstream 100 bases:

>100_bases
CAAAGGTTTTTATCGTCATTTTTAGTGCTCCGCGAAAAATTCTCTTTACAAATTGTCAGGAAATTAAACTATATTTGCAT
CCAATATCCAAGTCAGGGTT

Downstream 100 bases:

>100_bases
TTGATCCTCTTTATAAAAAGTAAGTGGAAATATTTAAACGTCATTTTCAAAAACATAAAACAGTTTATTTTTTCCTACTC
AGTCTATTCATCATTTACAA

Product: anti-sigma factor antagonist

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 113

Protein sequence:

>113_residues
MKIKVTTKNDVHIIKIEGPIKAGNEFELGQKIEEYISKGDVPKFIIDLKKVPFINSAGLGMFLNIYKHIDGLKGRMVFTN
LNSDIENLMEITKLASIFEIYKTLEEALESFEY

Sequences:

>Translated_113_residues
MKIKVTTKNDVHIIKIEGPIKAGNEFELGQKIEEYISKGDVPKFIIDLKKVPFINSAGLGMFLNIYKHIDGLKGRMVFTN
LNSDIENLMEITKLASIFEIYKTLEEALESFEY
>Mature_113_residues
MKIKVTTKNDVHIIKIEGPIKAGNEFELGQKIEEYISKGDVPKFIIDLKKVPFINSAGLGMFLNIYKHIDGLKGRMVFTN
LNSDIENLMEITKLASIFEIYKTLEEALESFEY

Specific function: In the phosphorylated form it could act as an anti-anti- sigma factor that counteracts an anti-sigma factor and thus releases a sigma factor from inhibition [H]

COG id: COG1366

COG function: function code T; Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 STAS domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003658
- InterPro:   IPR002645 [H]

Pfam domain/function: PF01740 STAS [H]

EC number: NA

Molecular weight: Translated: 12913; Mature: 12913

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: PS50801 STAS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIKVTTKNDVHIIKIEGPIKAGNEFELGQKIEEYISKGDVPKFIIDLKKVPFINSAGLG
CEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHH
MFLNIYKHIDGLKGRMVFTNLNSDIENLMEITKLASIFEIYKTLEEALESFEY
HHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKIKVTTKNDVHIIKIEGPIKAGNEFELGQKIEEYISKGDVPKFIIDLKKVPFINSAGLG
CEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHH
MFLNIYKHIDGLKGRMVFTNLNSDIENLMEITKLASIFEIYKTLEEALESFEY
HHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]