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The map label for this gene is orfC

Identifier: 45656686

GI number: 45656686

Start: 963262

End: 964632

Strand: Direct

Name: orfC

Synonym: LIC10793

Alternate gene names: 45656686

Gene position: 963262-964632 (Clockwise)

Preceding gene: 45656685

Following gene: 45656687

Centisome position: 22.52

GC content: 35.52

Gene sequence:

>1371_bases
TTGAACTCGAATCCAAAAAAAAAATTTCTAAAACTTATCAAAATTAAATCGGATATAATTCTGTTAATTCCTATATTTCT
GTTTTTAGTCTGCTGCAAAAGCGGAGACTTTTCTTTACTTTCTTCTCCAATCAATCGAGAAAAGAATGGAACCGAAATTG
TTAAGTTTAGTATTCATCCTTATAAAGGAACCGTAATACGATTGGGAGAAGAGATTCTTCCTTTTAAGGTTTTAGAAATG
GATAAAAATATCGCTTTGGTCGAAATGGCAATTCCCGTTTATAAGGATGAAAAGGAAATTGAATTAAAACTTTCTTCTCC
GGGTTTTCAAAATTCTTCTTACCGTATTAGAAAGCCGGAAGAACTAAATGAAAAATTGATAGCTTTAGATAAAGAGGGCA
TAACGCATCGTTTTATCTCAAGATTTAAAACAGGATTTCAGCCCAAAAGCGTTCGATTCATAGACAATACTAGGCTTGCG
ATTCCTCTTTTAGAAGATGAAGGTATGGACGTTTTGGATATAAATTCCGGTCAGACCGTCAGACTTTCTCCCCCTGAAAA
ATACAAAAAAAAATTGGGTTTTGTGGAAACGATTTCGATTCCAGAGCATAACGAACTTTGGGTCAGTCAGATGCAGGCAA
ATGCGGTTCACGTTTTCGATTTAAAAACTCTCGCGTATAAAGCGACGGTTGATCTAACGGGTAAATGGTCTAAAATCCTT
CTTTATGATCCAATTCGAGATTTGGTTTATTGCTCCAATTGGATTAGTGAGGATATTTCCGTTATTGATAGAAAAACGAA
ATTAGAAATTCGTAAAACAGATAAGATTGGTTTACCTCGTGGACTTTTACTTTCGAAAGACGGTAAAGAATTATATATTG
CTCAATTTTCCGCGAGCAATCAAGAATCTGGAGGTGGTAGACTTGGAATCTATTCTATGGATAAGGAAAAACTCATCGAT
ACAATCGGTCCTCCGGGGAACAAACGTCATATCGTCTCGGGCAATACTGAAAATAAGATTTATGTTTCTGATATGTGTTG
TAGCAAGATCGAAGTTTATGATTTAAAAGAAAAAAAAGTTCAAAAGTCAATTCCTGTATTCGATAAACCGAATACGATTG
CTCTTTCTCCTGACGGAAAGTATCTTTATGTTTCTTGTAGAGGTCCTAATCATCCAACCGAAGGTTATCTCAAAAAAGGT
TTGGTACTTGGAAAAGTTTATGTTATTGACACAACGACGGACACGGTTAAGGAATTTTGGGAAGCTGGTAATCAACCTAC
TGGTCTTGACGTTTCACCCGACAATCGTTACCTAGTGATCTCGGATTTTTTAGATCATCAAATTCGAGTTTATCGTAGAG
ATGGTTTTTAA

Upstream 100 bases:

>100_bases
ACATTCGTAATTTATCATTTTCTAATACGCCCTTTTTACTGGACCAACTTGATTTTGGGAAATCAAATACAAGCTAAAAA
GAACACCTAAGGAGTATTTC

Downstream 100 bases:

>100_bases
GTCTACGACAGTTTTTTAGTAAAAAACTGTTGCATTTGAGAATTCAACCAAAAACATGTCTCTTACCGGGCCTGTAGCTC
AGCTGGTTAGAGCACACGCT

Product: surface antigen

Products: NA

Alternate protein names: Surface Antigen OrfC Lipoprotein; 40-Residue YVTN Family Beta-Propeller Repeat Protein; YVTN Beta-Propeller Repeat-Containing Protein; Cell Surface Protein; Surface Layer Protein

Number of amino acids: Translated: 456; Mature: 456

Protein sequence:

>456_residues
MNSNPKKKFLKLIKIKSDIILLIPIFLFLVCCKSGDFSLLSSPINREKNGTEIVKFSIHPYKGTVIRLGEEILPFKVLEM
DKNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLA
IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKIL
LYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLID
TIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKG
LVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDGF

Sequences:

>Translated_456_residues
MNSNPKKKFLKLIKIKSDIILLIPIFLFLVCCKSGDFSLLSSPINREKNGTEIVKFSIHPYKGTVIRLGEEILPFKVLEM
DKNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLA
IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKIL
LYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLID
TIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKG
LVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDGF
>Mature_456_residues
MNSNPKKKFLKLIKIKSDIILLIPIFLFLVCCKSGDFSLLSSPINREKNGTEIVKFSIHPYKGTVIRLGEEILPFKVLEM
DKNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLA
IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKIL
LYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLID
TIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKG
LVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDGF

Specific function: Unknown

COG id: COG3391

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 51846; Mature: 51846

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSNPKKKFLKLIKIKSDIILLIPIFLFLVCCKSGDFSLLSSPINREKNGTEIVKFSIHP
CCCCHHHHHHHHHHHCCCEEHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCEEEEEEECC
YKGTVIRLGEEILPFKVLEMDKNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPE
CCCEEEECCCCCCCEEEEECCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCEEECCCH
ELNEKLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTV
HHCCCEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCEEEEEEECCCCCCEEECCCCCEE
RLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKIL
EECCCHHHHHHCCCEEEECCCCCCHHHHHHHCCCEEEEEEEEEEEEEEEEEECCCCEEEE
LYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASN
EECCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEECCCCEEEEEEECCCC
QESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV
CCCCCCEEEEEECCHHHHHHHCCCCCCCEEEECCCCCCEEEEECCCCCCEEEEECHHHHH
QKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW
HHCCCCCCCCCEEEECCCCCEEEEEECCCCCCCHHHHHCCEEEEEEEEEECCHHHHHHHH
EAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDGF
HCCCCCCCCEECCCCCEEEEECCCCCEEEEEEECCC
>Mature Secondary Structure
MNSNPKKKFLKLIKIKSDIILLIPIFLFLVCCKSGDFSLLSSPINREKNGTEIVKFSIHP
CCCCHHHHHHHHHHHCCCEEHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCEEEEEEECC
YKGTVIRLGEEILPFKVLEMDKNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPE
CCCEEEECCCCCCCEEEEECCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCEEECCCH
ELNEKLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTV
HHCCCEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCEEEEEEECCCCCCEEECCCCCEE
RLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKIL
EECCCHHHHHHCCCEEEECCCCCCHHHHHHHCCCEEEEEEEEEEEEEEEEEECCCCEEEE
LYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASN
EECCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEECCCCEEEEEEECCCC
QESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV
CCCCCCEEEEEECCHHHHHHHCCCCCCCEEEECCCCCCEEEEECCCCCCEEEEECHHHHH
QKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW
HHCCCCCCCCCEEEECCCCCEEEEEECCCCCCCHHHHHCCEEEEEEEEEECCHHHHHHHH
EAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDGF
HCCCCCCCCEECCCCCEEEEECCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA