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The map label for this gene is tpn50 [H]

Identifier: 45656435

GI number: 45656435

Start: 653295

End: 655277

Strand: Reverse

Name: tpn50 [H]

Synonym: LIC10537

Alternate gene names: 45656435

Gene position: 655277-653295 (Counterclockwise)

Preceding gene: 45656438

Following gene: 45656433

Centisome position: 15.32

GC content: 36.11

Gene sequence:

>1983_bases
ATGCATACCCTGCTGACTCTGATCTTAAGCCTTTTGCTTTTCTCTGGTCTTCAGTCTGAGAATAAAAATTCTTCCTCAAA
AAAACTAAGCGACTCTGCTTCTTGGATTCCTAAAGAAAATTTTACTCAACTCGCATCACAAAGAGAAAAATTCAAAAACG
TTTCTCATAACGAAACATTAAAACTAGAAATTGGCTATAAATTATTAACTGGAAAAATTCTTCAATTTGGAAAATTACTT
AGTACCGAAAACGCATACGTCCCCATCGAATCCAACGAAATTACTTCCGAACTTTCTCAACTCAACGACAAGACCGTAAG
AATTTTATGTAGTATGAAAGGTTCCACCTGCAATCCTATACGTTATGAAATTTATCCCTTTTGGGATTCGAAAGAAATCA
AACCTTGGACGATCAAAAAAATTCCTGATTACGTAAATCATAATATTTTTGCATTCAATCCTACAGTTTCCCCAGACGGT
AAATATCTTTTTTGGACCGCTTATGTCAAACGAGGTAAATCCGGAACTCAAAAGATTTGGTATTCCAAATTAGACGAAAA
AGGTTTTTGGGAAGATGGTAAGGAAATGAACGCTCCTTTAAATAATGAAATGCCTTCCGCTGTTATCTCTGCACTTCCTG
GTGGTAACGAACTTTTCGTCTTTGGAACGTTTGGCGAAAAAGAACTTTTAGACGAACTCAGTAAAGATTTTGAAACGAAA
GCAGACTTGGCCGCTCGTTCTTCTAAAAATTCAAACGTATATAGAAAAAAGATAGAAGAACTTAGAGCAGAATATGACGA
AAAAACGAAACAAATTTCAAGCAGAGTTCCTCTTTATAAAAGTTTTAAGGAAAAAGATTCCTGGTCTAAACCAAGTATAT
TAAACTTTCCTAATTTTTATAATCTTTATAGAAAGAGAAACGATTCAAGCCAAGAAATTTTCGGTGGATCTACTCTTTCT
TCTTCAGGGAGAATTTTAATCTATTCTTCTCAACATAAGGATTCCAAAGGAAAATTGGATCTTTATGTTAGCAAAATGTT
AAACGACGGAACCTTTCCTTTAGGTACGAACTTAGGAGATGTGATCAACACAACTCATGAAGAGATGGCTCCTTTTTTAG
CAAGCGATGATAGAACCCTTTATTTTTCTAGCGACGGTCATAAAGGGCTCTCTATTTATATGACAAAAAGAATCGGAGAA
GGTTGGGATCAATGGACCAAACCTGTCGAGGTTTCCGAAAATCTAAAAGGTGTAAATTTTTTTTCAATTCCCGCGAATAG
CGACTGGGCCTATATAAGCAAAGACGGCCGATTGTTTATGGCTTATCTTCCTAAAGAAATGCGCCCAGAGAAGGTCGTGA
TCATAAACGGAAAAGTTTTAGATACGGATGGTAACCCTCTTTCTGCTGACATACATTATGAATCTTTAAAGTCTCACGAA
AAGATCGGTAGCGCCAAAAGCGATCCTTCTAATGGTAATTTTTCGATCATTCTCCCCTTCGGCGAAAACTACGGTTTTTA
CGCCCAGAAAAAGGGTTATCTTCCAGTATCACAAAATTTGAATCTAAGTTCTAAAAAGAAATTCTCTGAAAAAGTGGAAG
TAATTTTACAACTTCCTCCGATCCGAGAAAGAGGTTCCATTCAAATCAATAATTTATTTTTTGAGTCCAAGAGTTTTCAA
ATCGCTCCGGAATCCGCCCCAGAACTGGATCGTCTCGCGGAAATTGTAAAGGAAAATCCAGATATTGAAATTCAGATTGA
AGGTCATACCGACAACATTGGCAAGAAAAAAGACAATCTAATTCTTTCCGAAAAAAGAGCGGCGGCGGTCGCAGAATATC
TTTTTCAAAAACATTCTATTTCTAAGACTAGAATCCAAACCAAAGGTTTTGGGGACAGTGTTCCTTTGAGTAAAAATGAT
TCCGAAGAAGCACGCAAAAAAAACAGAAGGGTCAATTTTACGATTTTGAAAAAAAGTAAATAA

Upstream 100 bases:

>100_bases
TTAGGATACCTGCCTGATGACCATGATTTTCAAAATAGGGTTTTTTGCCAATAAAAAGTAGAATTAAGTACTTTTGAAAT
TCTACCGAAGTTGAAAACGT

Downstream 100 bases:

>100_bases
AACTTTTTTATATTTTGGATATTGAACGTGTGTTCGGTGCAAGGATTCATTTTATAAAAAACTGATTTTTTCATAAAAAA
TAAATGTGGGAACTCCCCGA

Product: peptidoglycan associated periplasmic protein

Products: NA

Alternate protein names: Antigen tpp57 [H]

Number of amino acids: Translated: 660; Mature: 660

Protein sequence:

>660_residues
MHTLLTLILSLLLFSGLQSENKNSSSKKLSDSASWIPKENFTQLASQREKFKNVSHNETLKLEIGYKLLTGKILQFGKLL
STENAYVPIESNEITSELSQLNDKTVRILCSMKGSTCNPIRYEIYPFWDSKEIKPWTIKKIPDYVNHNIFAFNPTVSPDG
KYLFWTAYVKRGKSGTQKIWYSKLDEKGFWEDGKEMNAPLNNEMPSAVISALPGGNELFVFGTFGEKELLDELSKDFETK
ADLAARSSKNSNVYRKKIEELRAEYDEKTKQISSRVPLYKSFKEKDSWSKPSILNFPNFYNLYRKRNDSSQEIFGGSTLS
SSGRILIYSSQHKDSKGKLDLYVSKMLNDGTFPLGTNLGDVINTTHEEMAPFLASDDRTLYFSSDGHKGLSIYMTKRIGE
GWDQWTKPVEVSENLKGVNFFSIPANSDWAYISKDGRLFMAYLPKEMRPEKVVIINGKVLDTDGNPLSADIHYESLKSHE
KIGSAKSDPSNGNFSIILPFGENYGFYAQKKGYLPVSQNLNLSSKKKFSEKVEVILQLPPIRERGSIQINNLFFESKSFQ
IAPESAPELDRLAEIVKENPDIEIQIEGHTDNIGKKKDNLILSEKRAAAVAEYLFQKHSISKTRIQTKGFGDSVPLSKND
SEEARKKNRRVNFTILKKSK

Sequences:

>Translated_660_residues
MHTLLTLILSLLLFSGLQSENKNSSSKKLSDSASWIPKENFTQLASQREKFKNVSHNETLKLEIGYKLLTGKILQFGKLL
STENAYVPIESNEITSELSQLNDKTVRILCSMKGSTCNPIRYEIYPFWDSKEIKPWTIKKIPDYVNHNIFAFNPTVSPDG
KYLFWTAYVKRGKSGTQKIWYSKLDEKGFWEDGKEMNAPLNNEMPSAVISALPGGNELFVFGTFGEKELLDELSKDFETK
ADLAARSSKNSNVYRKKIEELRAEYDEKTKQISSRVPLYKSFKEKDSWSKPSILNFPNFYNLYRKRNDSSQEIFGGSTLS
SSGRILIYSSQHKDSKGKLDLYVSKMLNDGTFPLGTNLGDVINTTHEEMAPFLASDDRTLYFSSDGHKGLSIYMTKRIGE
GWDQWTKPVEVSENLKGVNFFSIPANSDWAYISKDGRLFMAYLPKEMRPEKVVIINGKVLDTDGNPLSADIHYESLKSHE
KIGSAKSDPSNGNFSIILPFGENYGFYAQKKGYLPVSQNLNLSSKKKFSEKVEVILQLPPIRERGSIQINNLFFESKSFQ
IAPESAPELDRLAEIVKENPDIEIQIEGHTDNIGKKKDNLILSEKRAAAVAEYLFQKHSISKTRIQTKGFGDSVPLSKND
SEEARKKNRRVNFTILKKSK
>Mature_660_residues
MHTLLTLILSLLLFSGLQSENKNSSSKKLSDSASWIPKENFTQLASQREKFKNVSHNETLKLEIGYKLLTGKILQFGKLL
STENAYVPIESNEITSELSQLNDKTVRILCSMKGSTCNPIRYEIYPFWDSKEIKPWTIKKIPDYVNHNIFAFNPTVSPDG
KYLFWTAYVKRGKSGTQKIWYSKLDEKGFWEDGKEMNAPLNNEMPSAVISALPGGNELFVFGTFGEKELLDELSKDFETK
ADLAARSSKNSNVYRKKIEELRAEYDEKTKQISSRVPLYKSFKEKDSWSKPSILNFPNFYNLYRKRNDSSQEIFGGSTLS
SSGRILIYSSQHKDSKGKLDLYVSKMLNDGTFPLGTNLGDVINTTHEEMAPFLASDDRTLYFSSDGHKGLSIYMTKRIGE
GWDQWTKPVEVSENLKGVNFFSIPANSDWAYISKDGRLFMAYLPKEMRPEKVVIINGKVLDTDGNPLSADIHYESLKSHE
KIGSAKSDPSNGNFSIILPFGENYGFYAQKKGYLPVSQNLNLSSKKKFSEKVEVILQLPPIRERGSIQINNLFFESKSFQ
IAPESAPELDRLAEIVKENPDIEIQIEGHTDNIGKKKDNLILSEKRAAAVAEYLFQKHSISKTRIQTKGFGDSVPLSKND
SEEARKKNRRVNFTILKKSK

Specific function: Could function as a porin [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=122, Percent_Identity=32.7868852459016, Blast_Score=74, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 74930; Mature: 74930

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHTLLTLILSLLLFSGLQSENKNSSSKKLSDSASWIPKENFTQLASQREKFKNVSHNETL
CHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEE
KLEIGYKLLTGKILQFGKLLSTENAYVPIESNEITSELSQLNDKTVRILCSMKGSTCNPI
EEEECCEEHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCEEEEEEECCCCCCCCE
RYEIYPFWDSKEIKPWTIKKIPDYVNHNIFAFNPTVSPDGKYLFWTAYVKRGKSGTQKIW
EEEEEEECCCCCCCCEEHHCCHHHHCCCEEEECCCCCCCCCEEEEEEEECCCCCCCHHHH
YSKLDEKGFWEDGKEMNAPLNNEMPSAVISALPGGNELFVFGTFGEKELLDELSKDFETK
HHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHH
ADLAARSSKNSNVYRKKIEELRAEYDEKTKQISSRVPLYKSFKEKDSWSKPSILNFPNFY
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCHHH
NLYRKRNDSSQEIFGGSTLSSSGRILIYSSQHKDSKGKLDLYVSKMLNDGTFPLGTNLGD
HHHHHCCCCCHHCCCCCEECCCCEEEEEECCCCCCCCCEEEEEEHHHCCCCCCCCCCCHH
VINTTHEEMAPFLASDDRTLYFSSDGHKGLSIYMTKRIGEGWDQWTKPVEVSENLKGVNF
HHCCCHHHHCCHHCCCCCEEEEECCCCCCEEEEEEEHHCCCHHHHCCCEECCCCCCCCEE
FSIPANSDWAYISKDGRLFMAYLPKEMRPEKVVIINGKVLDTDGNPLSADIHYESLKSHE
EECCCCCCEEEEECCCCEEEEECCCCCCCCEEEEEECEEEECCCCEEEEEEEHHHHHHHH
KIGSAKSDPSNGNFSIILPFGENYGFYAQKKGYLPVSQNLNLSSKKKFSEKVEVILQLPP
HHCCCCCCCCCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHEEEECCC
IRERGSIQINNLFFESKSFQIAPESAPELDRLAEIVKENPDIEIQIEGHTDNIGKKKDNL
CCCCCCEEEEEEEEECCCEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCE
ILSEKRAAAVAEYLFQKHSISKTRIQTKGFGDSVPLSKNDSEEARKKNRRVNFTILKKSK
EEEHHHHHHHHHHHHHHCCCCHHEEEECCCCCCCCCCCCCHHHHHHHCCCEEEEEEECCC
>Mature Secondary Structure
MHTLLTLILSLLLFSGLQSENKNSSSKKLSDSASWIPKENFTQLASQREKFKNVSHNETL
CHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEE
KLEIGYKLLTGKILQFGKLLSTENAYVPIESNEITSELSQLNDKTVRILCSMKGSTCNPI
EEEECCEEHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCEEEEEEECCCCCCCCE
RYEIYPFWDSKEIKPWTIKKIPDYVNHNIFAFNPTVSPDGKYLFWTAYVKRGKSGTQKIW
EEEEEEECCCCCCCCEEHHCCHHHHCCCEEEECCCCCCCCCEEEEEEEECCCCCCCHHHH
YSKLDEKGFWEDGKEMNAPLNNEMPSAVISALPGGNELFVFGTFGEKELLDELSKDFETK
HHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHH
ADLAARSSKNSNVYRKKIEELRAEYDEKTKQISSRVPLYKSFKEKDSWSKPSILNFPNFY
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCHHH
NLYRKRNDSSQEIFGGSTLSSSGRILIYSSQHKDSKGKLDLYVSKMLNDGTFPLGTNLGD
HHHHHCCCCCHHCCCCCEECCCCEEEEEECCCCCCCCCEEEEEEHHHCCCCCCCCCCCHH
VINTTHEEMAPFLASDDRTLYFSSDGHKGLSIYMTKRIGEGWDQWTKPVEVSENLKGVNF
HHCCCHHHHCCHHCCCCCEEEEECCCCCCEEEEEEEHHCCCHHHHCCCEECCCCCCCCEE
FSIPANSDWAYISKDGRLFMAYLPKEMRPEKVVIINGKVLDTDGNPLSADIHYESLKSHE
EECCCCCCEEEEECCCCEEEEECCCCCCCCEEEEEECEEEECCCCEEEEEEEHHHHHHHH
KIGSAKSDPSNGNFSIILPFGENYGFYAQKKGYLPVSQNLNLSSKKKFSEKVEVILQLPP
HHCCCCCCCCCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHEEEECCC
IRERGSIQINNLFFESKSFQIAPESAPELDRLAEIVKENPDIEIQIEGHTDNIGKKKDNL
CCCCCCEEEEEEEEECCCEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCE
ILSEKRAAAVAEYLFQKHSISKTRIQTKGFGDSVPLSKNDSEEARKKNRRVNFTILKKSK
EEEHHHHHHHHHHHHHHCCCCHHEEEECCCCCCCCCCCCCHHHHHHHCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8112835; 7623668; 9665876 [H]