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The map label for this gene is rbpB [H]

Identifier: 45656373

GI number: 45656373

Start: 550361

End: 550621

Strand: Reverse

Name: rbpB [H]

Synonym: LIC10475

Alternate gene names: 45656373

Gene position: 550621-550361 (Counterclockwise)

Preceding gene: 45656374

Following gene: 45656372

Centisome position: 12.87

GC content: 34.1

Gene sequence:

>261_bases
ATGTCGGTTAATATTTATGTAGGAAATCTTTCTTACGATTTGAATGAAGGAACATTAGGTGATCTTTTTAGAGCTCACGG
AACCGTGAATTCGGTAAAAATTATCATGGATCAGTATTCCGGAAAATCTAAAGGATTCGGTTTTGTTGAAATGCCCAATA
AAGAAGAAGCAGACAAAGCAATCAAAGATCTGGACGGAAAAAATGTTCTTACTCGCAACTTGAAAGTAAACGTTGCAAAA
CCAAAAAACGAAAGATTTTAA

Upstream 100 bases:

>100_bases
TCAAGTTCTGCATCTCTAAAATTTTTCTACTTCCTTTTCCGGGAAACGCTGTTTTAAAATCAAGATAACTTGATTTTATT
TATAATTACATGAGGTAAAC

Downstream 100 bases:

>100_bases
TTTTAAATCTTATGGTTTTTTAATATTAGAATTGTTGAAAAATTAATTCTCCATTTGTTTCTATTTTATGGAAATGGGCA
ATTGAAGGAGTTTTGTTAAT

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 86; Mature: 85

Protein sequence:

>86_residues
MSVNIYVGNLSYDLNEGTLGDLFRAHGTVNSVKIIMDQYSGKSKGFGFVEMPNKEEADKAIKDLDGKNVLTRNLKVNVAK
PKNERF

Sequences:

>Translated_86_residues
MSVNIYVGNLSYDLNEGTLGDLFRAHGTVNSVKIIMDQYSGKSKGFGFVEMPNKEEADKAIKDLDGKNVLTRNLKVNVAK
PKNERF
>Mature_85_residues
SVNIYVGNLSYDLNEGTLGDLFRAHGTVNSVKIIMDQYSGKSKGFGFVEMPNKEEADKAIKDLDGKNVLTRNLKVNVAKP
KNERF

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI46367787, Length=82, Percent_Identity=41.4634146341463, Blast_Score=66, Evalue=5e-12,
Organism=Homo sapiens, GI45238849, Length=82, Percent_Identity=41.4634146341463, Blast_Score=66, Evalue=8e-12,
Organism=Homo sapiens, GI14149675, Length=82, Percent_Identity=37.8048780487805, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI18201888, Length=84, Percent_Identity=44.047619047619, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17553656, Length=76, Percent_Identity=40.7894736842105, Blast_Score=70, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17567133, Length=83, Percent_Identity=42.1686746987952, Blast_Score=68, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17567131, Length=83, Percent_Identity=42.1686746987952, Blast_Score=68, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17508567, Length=76, Percent_Identity=40.7894736842105, Blast_Score=66, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI193209459, Length=80, Percent_Identity=40, Blast_Score=66, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17508585, Length=76, Percent_Identity=34.2105263157895, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI32564504, Length=79, Percent_Identity=36.7088607594937, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17531965, Length=79, Percent_Identity=36.7088607594937, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17508587, Length=79, Percent_Identity=35.4430379746835, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17531963, Length=79, Percent_Identity=36.7088607594937, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI221330652, Length=81, Percent_Identity=46.9135802469136, Blast_Score=65, Evalue=7e-12,
Organism=Drosophila melanogaster, GI62471589, Length=81, Percent_Identity=46.9135802469136, Blast_Score=65, Evalue=7e-12,
Organism=Drosophila melanogaster, GI19549692, Length=81, Percent_Identity=46.9135802469136, Blast_Score=65, Evalue=7e-12,
Organism=Drosophila melanogaster, GI19549690, Length=81, Percent_Identity=46.9135802469136, Blast_Score=65, Evalue=7e-12,
Organism=Drosophila melanogaster, GI221330653, Length=81, Percent_Identity=46.9135802469136, Blast_Score=65, Evalue=8e-12,
Organism=Drosophila melanogaster, GI19549688, Length=81, Percent_Identity=46.9135802469136, Blast_Score=65, Evalue=8e-12,
Organism=Drosophila melanogaster, GI19549694, Length=81, Percent_Identity=46.9135802469136, Blast_Score=65, Evalue=8e-12,
Organism=Drosophila melanogaster, GI17137710, Length=82, Percent_Identity=37.8048780487805, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24582417, Length=74, Percent_Identity=35.1351351351351, Blast_Score=62, Evalue=6e-11,
Organism=Drosophila melanogaster, GI45550943, Length=74, Percent_Identity=35.1351351351351, Blast_Score=62, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24582419, Length=74, Percent_Identity=35.1351351351351, Blast_Score=62, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24582423, Length=74, Percent_Identity=35.1351351351351, Blast_Score=62, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24582421, Length=74, Percent_Identity=35.1351351351351, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 9580; Mature: 9449

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVNIYVGNLSYDLNEGTLGDLFRAHGTVNSVKIIMDQYSGKSKGFGFVEMPNKEEADKA
CEEEEEECCEEEECCCCCHHHHHHHCCCCCEEEEEEECCCCCCCCCEEEECCCCCHHHHH
IKDLDGKNVLTRNLKVNVAKPKNERF
HHCCCCCCEEEECEEEEEECCCCCCC
>Mature Secondary Structure 
SVNIYVGNLSYDLNEGTLGDLFRAHGTVNSVKIIMDQYSGKSKGFGFVEMPNKEEADKA
EEEEEECCEEEECCCCCHHHHHHHCCCCCEEEEEEECCCCCCCCCEEEECCCCCHHHHH
IKDLDGKNVLTRNLKVNVAKPKNERF
HHCCCCCCEEEECEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]