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The map label for this gene is splB

Identifier: 45656100

GI number: 45656100

Start: 224064

End: 225101

Strand: Reverse

Name: splB

Synonym: LIC10195

Alternate gene names: NA

Gene position: 225101-224064 (Counterclockwise)

Preceding gene: 45656101

Following gene: 45656099

Centisome position: 5.26

GC content: 32.66

Gene sequence:

>1038_bases
ATGCGCTCAAGCAATTTTATCAGTCCTAAAAGATTCTCCCATATTTATGTGGAAGAATCTGCTAAAAATCATCCAAAAAC
TTTGGAAATTCTTTCTAAATTTCCGAAATCTTATACAATCCCTATCAATTCTTACAAAGAAGTATTCAACCCTTCGGCCC
AAAATTTCCAAGCCCAAAAGAGAAGCCCTAAACTCATATTAGCAAAACGCAAAGAACAATTCTTATATTCTGGTTCGGGT
GTAGCTCCAGATTTCGGCTATCGTTTTTTTTATTACAACGCACTTGTATTAAACTGTCTTTACAATTGTTCCTATTGTTA
CCTTCAAGGAATGTATCCTTCCGCAAATATAGTCATTTTTGTAAATAACGAAGACTTTATTTTAGAAACCAAAGAACAGC
TTACATTTTCAAAACCGTTATATCTTTGTATTTCTTATGATACTGACCTTCTAGCTTTAGAAAATACATTAGGATATTGT
AAAGAATGGATTTTATTTGCAAGTTCCTATCCGGATTTGATAATCGAAATCAGAACAAAAAGTGCGAATTTCAAATCAAT
TGCAGACCTTAAACCGGTTTCAAACGTTATTTTAGCTTGGACACTTTCTCCTGATTCAGTGATCCAAGAACACGAACCCT
TAACTCCTAGGCTTTCCTCTAGATTAAAGAATATTAAAGAAGCGTTAAATTCTGGTTGGCAAGTTCGTCTTTGTATCGAC
CCAATTCTAAACGTTCCGGATTGGAAATCGGTTTATTTGGAGTTTATTCATAAAATTTTTGAAGAAATTCCGGGAGAAAA
ATTAAGAGAAATCAGTTTAGGAGTTTTTAGGATGAATTTAGATTATTTTAAAAACTCTAAAAAAAGAAGACCGGATTCTT
ATTTGTTTTATTTACCCATGAACACAGATTCTGGAATGAAGTCTTATCCGGAAGATTTGGAAAAAGAAATGTTTGCAGTC
GTTGAAAAAGAATTAGAACTTTTCGTTTCAAAAGAAAAAATTCACAGACTCTTTGCCAACGAAATAGGATTCAAATGA

Upstream 100 bases:

>100_bases
TCCCCCGACTTAGGTCTTAGTATTTTAAAAAATTCGAATGGATTTTTAAAACCAGGCCAAACTAAAGTAAAAACTAGAGA
ATTAGGTAAAAAAGGGCTTT

Downstream 100 bases:

>100_bases
AAGCACCAAACGGCGATTTAGCGATAGTTACTGGTTCTTCCAAAGGAATCGGAAAAGCCATTTCAGAATTTTTGGTTTCC
GAAGGTTATAGAGTAATCGG

Product: photoproduct lyase

Products: NA

Alternate protein names: Radical SAM Domain Protein; DNA Repair Photolyase; Spore Photoproduct Lyase; DNA Repair PhotolyaB-Like Protein; Radical SAM Domain-Containing Protein; LOW QUALITY PROTEIN Spore Photoproduct Lyase; Spore Photoproduct; DNA Repair Photolyase-Like Protein Protein; Spore Photoproduct Lya Related Protein; LOW QUALITY PROTEIN DNA Repair Photolyase-Like Protein; Photolyase-Like Protein; Radical Sam Domain Protein; DNA Repair Photolyase-Like; Photoproduct Lyase

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MRSSNFISPKRFSHIYVEESAKNHPKTLEILSKFPKSYTIPINSYKEVFNPSAQNFQAQKRSPKLILAKRKEQFLYSGSG
VAPDFGYRFFYYNALVLNCLYNCSYCYLQGMYPSANIVIFVNNEDFILETKEQLTFSKPLYLCISYDTDLLALENTLGYC
KEWILFASSYPDLIIEIRTKSANFKSIADLKPVSNVILAWTLSPDSVIQEHEPLTPRLSSRLKNIKEALNSGWQVRLCID
PILNVPDWKSVYLEFIHKIFEEIPGEKLREISLGVFRMNLDYFKNSKKRRPDSYLFYLPMNTDSGMKSYPEDLEKEMFAV
VEKELELFVSKEKIHRLFANEIGFK

Sequences:

>Translated_345_residues
MRSSNFISPKRFSHIYVEESAKNHPKTLEILSKFPKSYTIPINSYKEVFNPSAQNFQAQKRSPKLILAKRKEQFLYSGSG
VAPDFGYRFFYYNALVLNCLYNCSYCYLQGMYPSANIVIFVNNEDFILETKEQLTFSKPLYLCISYDTDLLALENTLGYC
KEWILFASSYPDLIIEIRTKSANFKSIADLKPVSNVILAWTLSPDSVIQEHEPLTPRLSSRLKNIKEALNSGWQVRLCID
PILNVPDWKSVYLEFIHKIFEEIPGEKLREISLGVFRMNLDYFKNSKKRRPDSYLFYLPMNTDSGMKSYPEDLEKEMFAV
VEKELELFVSKEKIHRLFANEIGFK
>Mature_345_residues
MRSSNFISPKRFSHIYVEESAKNHPKTLEILSKFPKSYTIPINSYKEVFNPSAQNFQAQKRSPKLILAKRKEQFLYSGSG
VAPDFGYRFFYYNALVLNCLYNCSYCYLQGMYPSANIVIFVNNEDFILETKEQLTFSKPLYLCISYDTDLLALENTLGYC
KEWILFASSYPDLIIEIRTKSANFKSIADLKPVSNVILAWTLSPDSVIQEHEPLTPRLSSRLKNIKEALNSGWQVRLCID
PILNVPDWKSVYLEFIHKIFEEIPGEKLREISLGVFRMNLDYFKNSKKRRPDSYLFYLPMNTDSGMKSYPEDLEKEMFAV
VEKELELFVSKEKIHRLFANEIGFK

Specific function: Unknown

COG id: COG1533

COG function: function code L; DNA repair photolyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 4.1.99.-

Molecular weight: Translated: 40231; Mature: 40231

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSSNFISPKRFSHIYVEESAKNHPKTLEILSKFPKSYTIPINSYKEVFNPSAQNFQAQK
CCCCCCCCHHHCEEEEEECCCCCCCHHHHHHHHCCCCEEECCHHHHHHHCCCHHCCHHHC
RSPKLILAKRKEQFLYSGSGVAPDFGYRFFYYNALVLNCLYNCSYCYLQGMYPSANIVIF
CCCCEEEEEHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEE
VNNEDFILETKEQLTFSKPLYLCISYDTDLLALENTLGYCKEWILFASSYPDLIIEIRTK
ECCCCEEEECHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC
SANFKSIADLKPVSNVILAWTLSPDSVIQEHEPLTPRLSSRLKNIKEALNSGWQVRLCID
CCCCCHHHHCCCCCCEEEEEEECCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEC
PILNVPDWKSVYLEFIHKIFEEIPGEKLREISLGVFRMNLDYFKNSKKRRPDSYLFYLPM
CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHEEEEEEHHHHHCCCCCCCCCEEEEEEC
NTDSGMKSYPEDLEKEMFAVVEKELELFVSKEKIHRLFANEIGFK
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRSSNFISPKRFSHIYVEESAKNHPKTLEILSKFPKSYTIPINSYKEVFNPSAQNFQAQK
CCCCCCCCHHHCEEEEEECCCCCCCHHHHHHHHCCCCEEECCHHHHHHHCCCHHCCHHHC
RSPKLILAKRKEQFLYSGSGVAPDFGYRFFYYNALVLNCLYNCSYCYLQGMYPSANIVIF
CCCCEEEEEHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEE
VNNEDFILETKEQLTFSKPLYLCISYDTDLLALENTLGYCKEWILFASSYPDLIIEIRTK
ECCCCEEEECHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC
SANFKSIADLKPVSNVILAWTLSPDSVIQEHEPLTPRLSSRLKNIKEALNSGWQVRLCID
CCCCCHHHHCCCCCCEEEEEEECCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEC
PILNVPDWKSVYLEFIHKIFEEIPGEKLREISLGVFRMNLDYFKNSKKRRPDSYLFYLPM
CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHEEEEEEHHHHHCCCCCCCCCEEEEEEC
NTDSGMKSYPEDLEKEMFAVVEKELELFVSKEKIHRLFANEIGFK
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA